BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0137.p (216 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2312 [TK] COG2197 Response regulator containing a CheY-like r... 168 7e-42 YPO0255 [TK] COG2197 Response regulator containing a CheY-like r... 155 7e-38 VC1277 [TK] COG2197 Response regulator containing a CheY-like re... 153 2e-37 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 151 1e-36 BS_yvqC [TK] COG2197 Response regulator containing a CheY-like r... 149 3e-36 >RSc2312 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 238 Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 140/214 (65%), Gaps = 4/214 (1%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 R+++A+DH L+R G++++L+A+ +VVGEA DG E ++ L PDLVL D++M GMNG Sbjct: 6 RLLIAEDHHLLRCGLRSMLSALGEYDVVGEAKDGREACQLAISLAPDLVLTDLSMPGMNG 65 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 ++ + ++ P IR ++L++Y SEEYV +AL G +GY+ KD++ EL AL V G+ Sbjct: 66 IDMVATIKRRLPQIRVVVLTVYKSEEYVREALRVGVDGYVLKDASFEELVAALRAVMQGK 125 Query: 124 QYLDSHISREALDNYM---KRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 ++L + + + +++ + +A T E LT R+R +LQL+AEG +++ LN+S Sbjct: 126 RHLSADVYGNVVKSFVNGHEALAPKST-WETLTARERSVLQLVAEGRTNRQVGLYLNLSP 184 Query: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATP 214 KTIE +RA LME+L + +V GLV AI G+ P Sbjct: 185 KTIEKYRAHLMEKLGVGNVTGLVLAAIGLGLIAP 218 >YPO0255 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 210 Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 133/214 (62%), Gaps = 9/214 (4%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M T++++ DDH L+ GIK +L A P +VG+A +G EV + Q +PD+V+LD+ + G Sbjct: 1 MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPG 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 M+GL+ + +L +P ++ L L+ E Y + N+GA GY+ K S L A+ V Sbjct: 61 MDGLDVIIQLLRRWPALKILTLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVA 120 Query: 121 HGRQYLDSHISREALDNYMK-RVAQ--NGTPVEVLTPRQREILQLIAEGNNTKEIAYQLN 177 G++Y+D ALD M ++ Q + TP VLTPR+R+IL+LI EG+ + IA QL+ Sbjct: 121 IGKRYIDP-----ALDASMVIKLTQGSDNTP-PVLTPRERQILKLITEGSCNRVIAAQLS 174 Query: 178 VSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211 +S KT+ETHR +M++LD+ V L+ ++ R G+ Sbjct: 175 ISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208 >VC1277 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 216 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 127/208 (61%), Gaps = 3/208 (1%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 R+++ DDH +V G A L P +EVV AS+G E +E++ +PD+VL+D++M MNG Sbjct: 10 RVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMNG 69 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 +EA R ++ E P + LML+M+ + EY+MQ + AGA GY+ K+ +A ++ +A+ V G Sbjct: 70 IEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQGA 129 Query: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 Y + + VA P L+ R+ IL+++A+G ++K+IA LN+S +T+ Sbjct: 130 TYFCESTTSTLFSQEILPVANKPNP---LSRREEAILRMVAQGCSSKKIATLLNISYRTV 186 Query: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGI 211 ETHR + +LDI L +YA++ G+ Sbjct: 187 ETHRQNIKHKLDIHSTAELAQYALQHGL 214 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 219 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 125/202 (61%), Gaps = 7/202 (3%) Query: 2 LTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGM 61 + +++L DD L+R G++ALL P +E+VGEA +G I++IPQ PD+VL+D+ M M Sbjct: 1 MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIM 60 Query: 62 NGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKH 121 +G+ A + ++ +P ++ L+L+ + +EYV AL GA GYL KD+ + EL A+ V+ Sbjct: 61 DGVAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEK 120 Query: 122 GRQYLDSHISREALDNYMKRVAQNGTP-----VEVLTPRQREILQLIAEGNNTKEIAYQL 176 G L I ++ L + N TP + LTPR++E+L+LIA G N +EIA QL Sbjct: 121 GYTQLGPGIVKKLLVQFQS--TPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQL 178 Query: 177 NVSAKTIETHRAQLMERLDIRD 198 +S T++ H ++ RL++RD Sbjct: 179 YISEGTVKNHVTNILNRLNLRD 200 >BS_yvqC [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bsu Bacillus subtilis Length = 211 Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 126/207 (60%), Gaps = 1/207 (0%) Query: 2 LTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGM 61 + R++L DDH +VR G+ A L A P +EV+GEASDG+E + + +L PD++L+D+ M+GM Sbjct: 1 MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGM 60 Query: 62 NGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKH 121 +G+EA +++ E + ++L+ + ++ V + AGA YL K S A E+ A+ Sbjct: 61 DGIEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASK 120 Query: 122 GRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAK 181 G L+S ++ + L + ++ +N P E LT R+ EIL LIAEG KEI +L ++ K Sbjct: 121 GEPKLESKVAGKVL-SRLRHSGENALPHESLTKRELEILCLIAEGKTNKEIGEELFITIK 179 Query: 182 TIETHRAQLMERLDIRDVPGLVRYAIR 208 T++TH ++ +LD+ D YA R Sbjct: 180 TVKTHITNILSKLDVSDRTQAAVYAHR 206