BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0104.p (264 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella... 360 1e-99 AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacter... 354 1e-97 PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas... 348 6e-96 RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia ... 340 2e-93 BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus s... 338 9e-93 >BMEII0179 [R] COG0523 Putative GTPases (G3E family) Bme Brucella melitensis Length = 400 Score = 360 bits (925), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/261 (68%), Positives = 216/261 (82%), Gaps = 2/261 (0%) Query: 1 VTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEEKLV 60 VTVLSGFLGAGKTTLLNH+L+NRE RRVAVIVNDMSE+N+DAAL+R+GGADLSRTEE+LV Sbjct: 7 VTVLSGFLGAGKTTLLNHVLNNRENRRVAVIVNDMSEINVDAALIREGGADLSRTEEQLV 66 Query: 61 EMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEEGASLAD 120 EM+NGCICCTLR+DLL EV +LA + RFD L+IESTGISEPLPVA TF F DE G SL+D Sbjct: 67 EMTNGCICCTLRDDLLKEVSQLAAQGRFDYLLIESTGISEPLPVAATFEFRDERGKSLSD 126 Query: 121 VARLDTMVTVVDAFNFLKDYSSQDSLQERGESMGEEDSRTVVDLLIEQIEFCDVIVLNKL 180 ARLDTMVTVVDA NFLKDY+S D L++RGES+GEED RT+VDLL+EQIEF +V+VLNK+ Sbjct: 127 GARLDTMVTVVDAANFLKDYASGDFLRDRGESLGEEDERTLVDLLVEQIEFANVVVLNKI 186 Query: 181 DLVSPLDLERLHAILHKLNPRARIVTSEFGKVALDQVLNTGLFDFEQASQAPGWLQELRG 240 +VS + ++ LNP ARI ++FG+V L+ +L+T LFDF +A + P W +EL G Sbjct: 187 SMVSKEECALARKVIRSLNPDARIEETDFGQVPLNTILDTRLFDFNKAHEHPLWYKELYG 246 Query: 241 --EHVPETEQYGITSFAWRAR 259 +HVPETE+YG SF +RAR Sbjct: 247 FNQHVPETEEYGARSFVYRAR 267 >AGl3257 [R] COG0523 Putative GTPases (G3E family) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/261 (66%), Positives = 212/261 (81%), Gaps = 2/261 (0%) Query: 1 VTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEEKLV 60 VTVLSGFLGAGKTTLLNHIL NR+G RVA+IVNDMSE+NIDAALVRDGGA+LSRTEE+LV Sbjct: 37 VTVLSGFLGAGKTTLLNHILANRDGLRVALIVNDMSEINIDAALVRDGGANLSRTEEQLV 96 Query: 61 EMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEEGASLAD 120 EM+NGCICCTLR+DLL EVR LA + RFD L+IESTGI+EPLPVA TF F DE G SL+D Sbjct: 97 EMTNGCICCTLRDDLLTEVRALAEQGRFDYLLIESTGIAEPLPVAATFDFRDENGRSLSD 156 Query: 121 VARLDTMVTVVDAFNFLKDYSSQDSLQERGESMGEEDSRTVVDLLIEQIEFCDVIVLNKL 180 VA+LDTMVTVVDA N L DY S D L +RGE+ G+ D+RT+VDLL+EQIEF DV+VLNK+ Sbjct: 157 VAQLDTMVTVVDAANLLNDYGSSDFLADRGETAGDGDNRTIVDLLVEQIEFADVVVLNKI 216 Query: 181 DLVSPLDLERLHAILHKLNPRARIVTSEFGKVALDQVLNTGLFDFEQASQAPGWLQELRG 240 +P + + I+ LNP A+++ ++FGKV L +VL TG FDF +A + P W +EL G Sbjct: 217 GTATPEERDAARKIIVGLNPDAKLIEADFGKVELKEVLGTGRFDFARAEEHPLWFKELHG 276 Query: 241 --EHVPETEQYGITSFAWRAR 259 +H+PETE+YGI SF +RA+ Sbjct: 277 FKDHIPETEEYGIRSFVYRAK 297 >PA5535 [R] COG0523 Putative GTPases (G3E family) Pae Pseudomonas aeruginosa Length = 400 Score = 348 bits (893), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 176/260 (67%), Positives = 211/260 (81%), Gaps = 3/260 (1%) Query: 1 VTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALV-RDGGADLSRTEEKL 59 VTVLSGFLGAGK+TLLNH+L NRE RRVAVIVNDMSE+NID + V RD L+R EE+L Sbjct: 7 VTVLSGFLGAGKSTLLNHVLKNRENRRVAVIVNDMSEINIDGSEVQRD--VSLNRAEERL 64 Query: 60 VEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEEGASLA 119 VEMSNGCICCTLREDLL EV +LARE RFD L+IESTGISEP+PVAETFTF DE SL+ Sbjct: 65 VEMSNGCICCTLREDLLEEVGRLAREGRFDYLLIESTGISEPMPVAETFTFRDELDRSLS 124 Query: 120 DVARLDTMVTVVDAFNFLKDYSSQDSLQERGESMGEEDSRTVVDLLIEQIEFCDVIVLNK 179 DVARLDTMVTVVD NFL+DY SL RGE++GEED R++ DLLI+Q+EF DVI+++K Sbjct: 125 DVARLDTMVTVVDGMNFLRDYQEAASLASRGETLGEEDQRSITDLLIDQVEFADVILVSK 184 Query: 180 LDLVSPLDLERLHAILHKLNPRARIVTSEFGKVALDQVLNTGLFDFEQASQAPGWLQELR 239 +DL+S E L AIL +LN A I+ G+V L ++L+TG FDF++A+ APGWL+ELR Sbjct: 185 IDLISSEQREELLAILRQLNAEAEILPMVMGQVPLAKILDTGRFDFDRAASAPGWLKELR 244 Query: 240 GEHVPETEQYGITSFAWRAR 259 GEH+PETE+YGI S A+RAR Sbjct: 245 GEHLPETEEYGIASMAYRAR 264 >RSc0045 [R] COG0523 Putative GTPases (G3E family) Rso Ralstonia solanacearum Length = 424 Score = 340 bits (872), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 179/260 (68%), Positives = 210/260 (80%), Gaps = 3/260 (1%) Query: 3 VLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDG---GADLSRTEEKL 59 +LSGFLGAGKTTLLNH+L NREG+RVAVIVND+S+VNIDA LV DG A LSRT+E++ Sbjct: 1 MLSGFLGAGKTTLLNHVLANREGKRVAVIVNDLSDVNIDAQLVGDGTATSAQLSRTDERM 60 Query: 60 VEMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEEGASLA 119 VE+SNGCICCTLREDLL E+ +LARE RFD L+IESTG++EPLP+AETFTF D EG L+ Sbjct: 61 VELSNGCICCTLREDLLDEIARLAREDRFDYLLIESTGVAEPLPIAETFTFEDAEGRLLS 120 Query: 120 DVARLDTMVTVVDAFNFLKDYSSQDSLQERGESMGEEDSRTVVDLLIEQIEFCDVIVLNK 179 D+ARLDTMVTVVDA +FL DY + D L +RG++ E+D RTVVDLLIEQ+EFCDVIVLNK Sbjct: 121 DLARLDTMVTVVDAQHFLADYDAADFLADRGQARDEDDDRTVVDLLIEQVEFCDVIVLNK 180 Query: 180 LDLVSPLDLERLHAILHKLNPRARIVTSEFGKVALDQVLNTGLFDFEQASQAPGWLQELR 239 DLV + ERL ILH LNPRARI+ + FG V LD +LNT FDF+ A+ AP WL ELR Sbjct: 181 TDLVDEAERERLAGILHSLNPRARILPASFGHVPLDAILNTHRFDFDAAAAAPAWLAELR 240 Query: 240 GEHVPETEQYGITSFAWRAR 259 GEHV ETE GI SF +R R Sbjct: 241 GEHVAETEALGIRSFVYRRR 260 >BS_yciC [R] COG0523 Putative GTPases (G3E family) Bsu Bacillus subtilis Length = 397 Score = 338 bits (866), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 170/263 (64%), Positives = 208/263 (79%), Gaps = 5/263 (1%) Query: 1 VTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLSRTEEKLV 60 VTVLSG+LGAGKTTLLN IL NREG ++AVIVNDMSEVNIDA LV+ G LSRT+EKLV Sbjct: 6 VTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGG-LSRTDEKLV 64 Query: 61 EMSNGCICCTLREDLLMEVRKLARERRFDQLVIESTGISEPLPVAETFTFTDEE-GASLA 119 EMSNGCICCTLREDLL+EV KLA++ RFD +VIESTGISEP+PVA+TF++ DEE G L Sbjct: 65 EMSNGCICCTLREDLLIEVEKLAKDGRFDYIVIESTGISEPIPVAQTFSYIDEEMGIDLT 124 Query: 120 DVARLDTMVTVVDAFNFLKDYSSQDSLQERGESMGEEDSRTVVDLLIEQIEFCDVIVLNK 179 +LDTMVTVVDA F DY S +SL +R E++GE+D R + DLLI+QIEFCDV++LNK Sbjct: 125 KFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDVLILNK 184 Query: 180 LDLVSPLDLERLHAILHKLNPRARIVTSEFGKVALDQVLNTGLFDFEQASQAPGWLQEL- 238 DLVS +LE+L +L KL PRAR + S G V ++L+TGLF+FE+AS + GW+QEL Sbjct: 185 CDLVSEQELEQLENVLRKLQPRARFIRSVKGNVKPQEILHTGLFNFEEASGSAGWIQELT 244 Query: 239 --RGEHVPETEQYGITSFAWRAR 259 EH PETE+YGI+SF ++ R Sbjct: 245 AGHAEHTPETEEYGISSFVYKRR 267