BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0095.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   139   2e-33
AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archae...   105   6e-23

>PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 180

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 110/179 (61%), Gaps = 9/179 (5%)

Query: 1   MLIQAHQSALLVIDPQEKLLPAIHEGQAVLAQTVRMAAIAGLLGVPVIATEQMPDKLGHN 60
           MLI+A  S LLV+D QE+LLPAI +G A++  +  +  +A  L VPV+A+EQ    LG  
Sbjct: 1   MLIRAATSTLLVVDIQERLLPAIDDGPALVEYSQWLLRVARALDVPVLASEQYSKGLG-- 58

Query: 61  HPDIARLCDK-----TLSKQHFDACADGLLPVIPP-TVRQLIVAGCEAHICVLQTALSLL 114
            P +A L D+      L K  F A ADG L   P    RQ +V G EAH+CVLQT L LL
Sbjct: 59  -PTVAALRDELEPTQILEKLDFSAAADGALLRAPGGDRRQFVVCGSEAHVCVLQTVLDLL 117

Query: 115 QQGYTVLPLLEACGSRRPLDRDAAFERLRAAGAIPVTLEMVAYEWLQHSAHPQFRAVLK 173
            +G  V  + EA GSRRP D+  A ER+R AGA+ V+ EMVA+EW++ +   +FR + +
Sbjct: 118 GRGREVFVVEEAIGSRRPSDKALAVERMRQAGAMIVSREMVAFEWMERAGSDRFREISR 176


>AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archaeoglobus
           fulgidus
          Length = 170

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 4/170 (2%)

Query: 9   ALLVIDPQEKLLPAIHEGQAVLAQTVRMAAIAGLLGVPVIATEQMPDKLGHNHPDIARLC 68
           AL+V+D QEKL P I   + +L +TV++      L  PVI TEQ+  KLG    ++A   
Sbjct: 2   ALVVVDVQEKLAPHIEGIEEMLKRTVKLVKAIVALKQPVIFTEQI--KLGKTVDELAEYA 59

Query: 69  DKTLSKQHFDACADGLLPVIPPTVR--QLIVAGCEAHICVLQTALSLLQQGYTVLPLLEA 126
           ++ + K  F    D         ++  ++I+AG EAHICVLQTA+ + + GY V  + + 
Sbjct: 60  EEPIVKSTFSCYKDENFRRKIEELKPEKVILAGIEAHICVLQTAIDMKRAGYDVYVVADC 119

Query: 127 CGSRRPLDRDAAFERLRAAGAIPVTLEMVAYEWLQHSAHPQFRAVLKLVK 176
            GSR+  D++ A  RL   G    T E + YE L+ + HP FR +L++VK
Sbjct: 120 TGSRKAEDKEIALMRLAGEGIKLTTWESIVYELLESAEHPAFREILQIVK 169