BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0093.p         (69 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv1931c_2 [K] COG2207 AraC-type DNA-binding domain-containing pr...    67   1e-11
MT1981_2 [K] COG2207 AraC-type DNA-binding domain-containing pro...    66   2e-11
mll3844 [K] COG4977 Transcriptional regulator containing an amid...    60   1e-09
PA1850 [K] COG4977 Transcriptional regulator containing an amida...    58   7e-09

>Rv1931c_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mtu
          Mycobacterium tuberculosis H37Rv
          Length = 88

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 4  ETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYR 63
          E G  P R VE +R EAARR LEET   +  IA++ G+G  + +RR F+R++G+SP QYR
Sbjct: 25 EVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSFIRRVGISPDQYR 84

Query: 64 ERFA 67
          + FA
Sbjct: 85 KAFA 88


>MT1981_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins MtC
          Mycobacterium tuberculosis CDC1551
          Length = 85

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 4  ETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYR 63
          E G  P R VE +R EAARR LEET   +  IA++ G+G  + +RR F+R++G+SP QYR
Sbjct: 22 EVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSFIRRVGISPDQYR 81

Query: 64 ERFA 67
          + FA
Sbjct: 82 KAFA 85


>mll3844 [K] COG4977 Transcriptional regulator containing an amidase domain
           and an AraC-type DNA-binding HTH domain Mlo
           Mesorhizobium loti
          Length = 332

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 39/68 (57%)

Query: 2   AAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQ 61
           AA TG TPAR +   RL  AR  LE+T LP++RIA  +G+G    LR  F RQ   +P  
Sbjct: 261 AAATGVTPARWLLSERLSRARTLLEDTALPIERIAETAGFGAAATLRHHFRRQFATTPAA 320

Query: 62  YRERFAAQ 69
           YR RF   
Sbjct: 321 YRARFGTN 328


>PA1850 [K] COG4977 Transcriptional regulator containing an amidase domain
           and an AraC-type DNA-binding HTH domain Pae Pseudomonas
           aeruginosa
          Length = 334

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 4   ETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYR 63
           E G  P R VE +RLEAAR  L++ +  +  ++   G+G  +NLRR F + L VSP +Y 
Sbjct: 268 ELGVAPGRYVERVRLEAARALLQDAQASIATVSRLCGFGHPENLRRTFHKHLSVSPQEYA 327

Query: 64  ERF 66
           ERF
Sbjct: 328 ERF 330