BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0080.p (186 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF0322 [TK] COG0745 Response regulators consisting of a CheY-lik... 167 9e-42 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 167 2e-41 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 158 5e-39 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 157 1e-38 RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li... 145 4e-35 >XF0322 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 231 Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 87/163 (53%), Positives = 108/163 (66%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP DG LL +LR RG TPVLMLTA IE+RV L++GADDYL KPFDFRE +AR R Sbjct: 54 LPSLDGLQLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCR 113 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 VLLRR+ G ++ ++ + D + LDG+PI+L RE LLEI+ AR G+I KDE Sbjct: 114 VLLRRNRGSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDE 173 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGY 164 + + LF DD N +E YVARLR+KL AA I T+RG GY Sbjct: 174 IGNSLFNFDDNAGPNAIELYVARLRRKLEAAPLRIVTVRGAGY 216 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 4/167 (2%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ DGF +L +LR RG+ PVLMLTA GE+++RV L+LGADDYL KPF+ EL+AR++ Sbjct: 54 LPRMDGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVK 113 Query: 62 VLLRRS--GGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNK 119 LLRRS GGE L C L D +R +LD QP+ LT RE +LE + ARPGR+ +K Sbjct: 114 ALLRRSVLGGE--QLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSK 171 Query: 120 DELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 ++L ++F +D+ +A+ +E YV RLRKKL A I T RGLGY L Sbjct: 172 EQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 109/165 (66%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ DG +L +RAR VL+LTA G EERV+ LDLGADDYL+KPFD E +AR+R Sbjct: 54 LPEMDGLDVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVR 113 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 VLLRR G +++ N+ +D SR+ + G PIE+ RE+ LLE++ R G++ KD Sbjct: 114 VLLRRQAGLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDA 173 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 ++ L +DD + N +EQYV+RLRK+LA +RT RG+GY L Sbjct: 174 IVQSLTGLDDDLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYL 218 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 110/165 (66%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ DG +L +R+R VL+LTA G EE+V+ LDLGADDY++KPFD E +AR+R Sbjct: 73 LPEMDGIEVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVR 132 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 VLLRR+ G ++ L + D SRT + DG+P+++ REV LLE++ R G++ K+ Sbjct: 133 VLLRRNAGLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEA 192 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 ++ L DD +AN +EQYV+RLRK+LA ++T RG+GY L Sbjct: 193 IVQSLTGFDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYL 237 >RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 232 Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 1/173 (0%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ G +L++LR+RG PVL+LTA ++ERV+ LDLGADDY+ KPF EL+AR+R Sbjct: 57 LPRLSGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVR 116 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 L+RR G L+ L D+ R A + Q ++L+ RE+ LLEI+ +R GR+ +K++ Sbjct: 117 ALVRRGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQ 176 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQLV-LHAPAA 173 L+D L + + N +E YV RLRKK+ I T+RGLGY L + PAA Sbjct: 177 LVDHLCGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCLERVSVPAA 229