BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0063.p         (98 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0689 [GEPR] COG0477 Permeases of the major facilitator superf...   130   6e-31
RSc3060 [GEPR] COG0477 Permeases of the major facilitator superf...   119   2e-27
RSc3059 [GEPR] COG0477 Permeases of the major facilitator superf...   118   4e-27
PA5476 [GEPR] COG0477 Permeases of the major facilitator superfa...   117   4e-27
PA0703 [GEPR] COG0477 Permeases of the major facilitator superfa...    82   3e-16

>STM0689 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty
          Salmonella typhimurium LT2
          Length = 434

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 73/90 (81%)

Query: 2  TTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGA 61
          T +TS    F  +LRVTSGNF+E FDFFLFGFYAT+I++ FFP+++EFASLMLTF  FG+
Sbjct: 5  TPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGS 64

Query: 62 GFLMRPLGAIILGAYVDRVGRRSNFKCSIC 91
          GFLMRP+GAI+LGAY+DR+GRR     ++ 
Sbjct: 65 GFLMRPVGAIVLGAYIDRIGRRKGLMVTLA 94


>RSc3060 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
          Ralstonia solanacearum
          Length = 433

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query: 1  MTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 60
          M T   ++SK   + RV SGNF+EMFDF ++G+YAT I+  FFP+ N F SLML+ MTFG
Sbjct: 1  MHTHNPNESKARAIFRVVSGNFLEMFDFMVYGYYATAIAATFFPAGNAFLSLMLSLMTFG 60

Query: 61 AGFLMRPLGAIILGAYVDRVGRRSNFKCSIC 91
          AGFLMRPLGAI+LGAY+DR GRR+    ++ 
Sbjct: 61 AGFLMRPLGAIVLGAYIDRHGRRAGLILTLV 91


>RSc3059 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
          Ralstonia solanacearum
          Length = 431

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query: 1  MTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 60
          M T   ++SK  ++ RV SGNF+EM+DF ++G+YA  I+  FFP+DNEF SLML+ +TFG
Sbjct: 1  MHTHNPNESKARSIFRVVSGNFLEMYDFMVYGYYAKAIADTFFPADNEFLSLMLSLVTFG 60

Query: 61 AGFLMRPLGAIILGAYVDRVGRRSNFKCSI 90
           GFLMRPLGA+ILGAY+DR GRR+    ++
Sbjct: 61 VGFLMRPLGALILGAYIDRHGRRAGLILTL 90


>PA5476 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
          Pseudomonas aeruginosa
          Length = 429

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query: 6  SSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAGFLM 65
          S++SK   + RV SGNF+EM+DF ++GFYAT I+K FFP DN FASLML+  TFGAGFLM
Sbjct: 3  SNKSKGVAIFRVVSGNFLEMYDFMVYGFYATAIAKTFFPGDNPFASLMLSLATFGAGFLM 62

Query: 66 RPLGAIILGAYVDRVGRRSNFKCSI 90
          RPLGA+ LGAY+DR GRR     ++
Sbjct: 63 RPLGAVFLGAYIDRHGRRQGLIITL 87


>PA0703 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
          Pseudomonas aeruginosa
          Length = 438

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 4/78 (5%)

Query: 6  SSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAGFLM 65
          S +S F+ VL    GN +E FDF ++  +A  I + FFPSD+ F SL+L+   FG GF++
Sbjct: 15 SRRSVFAVVL----GNAVEFFDFGVYATFAVMIGRTFFPSDSAFVSLLLSVTAFGVGFVI 70

Query: 66 RPLGAIILGAYVDRVGRR 83
          RPLGA+++GAY DR GR+
Sbjct: 71 RPLGAVLIGAYADRAGRK 88