BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0021.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydeS [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis    77   1e-14
CAC3481 [K] COG1309 Transcriptional regulator Cac Clostridium ac...    73   2e-13

>BS_ydeS [K] COG1309 Transcriptional regulator Bsu Bacillus subtilis
          Length = 198

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 65/119 (54%)

Query: 1   MEALLRAVEPLPPLGDSGSARDDIEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIF 60
           M++ L       P+ D+GS+  DI  H   L++ L  + G V++E+I   Q + +    +
Sbjct: 61  MDSFLSTATDRLPVPDTGSSVQDIVTHATNLARFLTSREGTVIKELIGAGQLDEKLAEEY 120

Query: 61  NDNYLEPRRLALVNVLRRGAQRGEFREDADLNLVFDLLYAPVLQRLLTGSADIDERQIQ 119
              + +PRRL    +L +G Q+GE RE+ D+ +  DL+Y P+  RLL    ++++  ++
Sbjct: 121 RTRFFQPRRLQAKGLLEKGIQKGELRENLDIEVSIDLIYGPIFYRLLITGDEVNDSYVR 179


>CAC3481 [K] COG1309 Transcriptional regulator Cac Clostridium
           acetobutylicum
          Length = 192

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query: 13  PLGDSGSARDDIEQHMLQLSQLLRGKSGRVVREMIALAQFEPESRRIFNDNYLEPRRLAL 72
           P+ D+GS   D+   +   ++ L  + G V+ E+IA  Q++P+   I+   Y  PRR   
Sbjct: 73  PIPDTGSTIQDMFIQVDNFTKFLTSRKGSVITEIIAEGQYDPKLADIYRKAYFTPRRSIS 132

Query: 73  VNVLRRGAQRGEFREDADLNLVFDLLYAPVLQRLLTGSADID 114
             +L RG  RGE ++D ++ ++ DL++ P+  RLL     ID
Sbjct: 133 KKILERGILRGELKKDLNIEVIIDLIWGPIFYRLLITGEKID 174