BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0013.p (810 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 119 3e-26 PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and re... 115 5e-25 CAC0118 [NT] COG0643 Chemotaxis protein histidine kinase and rel... 112 3e-24 AGc912 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 110 1e-23 PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 108 4e-23 >AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Afu Archaeoglobus fulgidus Length = 656 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 97/160 (60%), Gaps = 13/160 (8%) Query: 622 VVHSFASPLLQNVFMHLIRNAVDHGLESGEERLAKGKPEAGTIKLEMGVMEDMFQMALSD 681 V+ + PL+ HL+RNAVDHG+E+ EER+A GK E G IKL ++ + L D Sbjct: 375 VLDEISDPLV-----HLVRNAVDHGIETPEERVAAGKDEVGRIKLAAWREKNNIIIELED 429 Query: 682 DGRGLALHKVRQIAIEKQLISVDQV--LTDAEIARLILQPGFSTRSEVTEVSGRGVGMDA 739 DGRGL + K++Q AIEK ++S + +++ EI LI PGFST+ E TEVSGRGVGMD Sbjct: 430 DGRGLDVEKIKQKAIEKGIVSPAEADSMSEDEIKMLIFSPGFSTKDEATEVSGRGVGMDV 489 Query: 740 VLDFVTREHGKIEIRFMDSEEGAAFRAFQIIVMLPENVAV 779 V V R G + I SE+G R I + LP VA+ Sbjct: 490 VKTTVERLGGSVRI---SSEKGNGTR---IRIHLPPTVAI 523 >PA0413_2 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Pae Pseudomonas aeruginosa Length = 1468 Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 105/181 (58%), Gaps = 15/181 (8%) Query: 603 LASDLGKSAPIVQIDDNG----YVVHSFASPLLQNVFMHLIRNAVDHGLESGEERLAKGK 658 +A +LGK V + +G V+ +PL H++RNAVDHG+ESGE R A GK Sbjct: 1139 VAGELGKQVEFVVGNADGEMDRTVLERIVAPL-----EHMLRNAVDHGIESGETRRAAGK 1193 Query: 659 PEAGTIKLEMGVMEDMFQMALSDDGRGLALHKVRQIAIEKQLISVDQVLTDAEIARLILQ 718 PE GTI+L +G + LSDDG G+ L VR+ AIE+ L+S D L+D E+ + +L+ Sbjct: 1194 PEHGTIRLNIGREGGDILLTLSDDGAGIRLDAVRRKAIERGLMSADSDLSDHEVLQFVLE 1253 Query: 719 PGFSTRSEVTEVSGRGVGMDAVLDFVTREHGKIEIRFMDSEEGAAFRAFQIIVMLPENVA 778 GFST +VT++SGRGVG+D V + G + I+ +E G R V LP V+ Sbjct: 1254 SGFSTAEKVTQISGRGVGLDVANSEVKQLGGSVSIQ---TEPGQGTR---FNVRLPFTVS 1307 Query: 779 V 779 V Sbjct: 1308 V 1308 >CAC0118 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Cac Clostridium acetobutylicum Length = 649 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 14/172 (8%) Query: 615 QIDDNGYVVHSFASPLLQNVFMHLIRNAVDHGLESGEERLAKGKPEAGTIKLEMGVMEDM 674 ++D N ++ A PL MHL+RN++DHG+E E+R GK E G + LE + Sbjct: 358 EVDKN--IIEHIADPL-----MHLVRNSIDHGIEDREQRKRCGKTEKGLVVLEAKNLGSD 410 Query: 675 FQMALSDDGRGLALHKVRQIAIEKQLISVDQVLTDAEIARLILQPGFSTRSEVTEVSGRG 734 + + DDG GL +K+ Q A EK LI +++++D + LIL+PGFST +EVTE SGRG Sbjct: 411 VVIRIKDDGGGLDKNKILQKAKEKGLIGENEIVSDEKTCSLILEPGFSTNNEVTEFSGRG 470 Query: 735 VGMDAVLDFVTREHGKIEIRFMDSEEGAAFRAFQIIVMLPENVAVEVDGIDV 786 VGMD V + G+I + S EG + II+ +P +A+ +DGI+V Sbjct: 471 VGMDVVSRNIGDMGGRINVS---SSEG---KGTTIILKIPLTLAI-IDGINV 515 >AGc912 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 757 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 98/177 (55%), Gaps = 14/177 (7%) Query: 622 VVHSFASPLLQNVFMHLIRNAVDHGLESGEERLAKGKPEAGTIKLEMGVMEDMFQMALSD 681 V+ A PL H+IRNAVDHG+E+ E+R A GK GTIKL + L D Sbjct: 462 VIDKLAEPL-----THMIRNAVDHGIETPEKREAAGKNPEGTIKLSAKHRSGRILIELQD 516 Query: 682 DGRGLALHKVRQIAIEKQLISVDQVLTDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVL 741 DG G+ +VRQ AI+ LI+ D LTD EI LI PGFST +++++SGRGVGMD V Sbjct: 517 DGAGINRERVRQKAIDNDLIAADANLTDEEIDNLIFAPGFSTADKISDISGRGVGMDVVK 576 Query: 742 DFVTREHGKIEIRFMDSEEGAAFRAFQIIVMLPENVAVEVDGIDVPYPVAGQEIAAP 798 + G+I I G+ F + LP +AV +DG+ V VAGQ + P Sbjct: 577 RSIQALGGRISISSRPG-LGSTF-----TMSLPLTLAV-LDGMVV--TVAGQTLVVP 624 >PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Pae Pseudomonas aeruginosa Length = 753 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 13/167 (7%) Query: 615 QIDDNGYVVHSFASPLLQNVFMHLIRNAVDHGLESGEERLAKGKPEAGTIKLEMGVMEDM 674 + D + +V + A PL+ HL+RNAVDHG+ES EER A GKP G + L D Sbjct: 462 ETDLDKNLVEALADPLV-----HLVRNAVDHGIESPEEREAAGKPRVGQVVLSAEQEGDH 516 Query: 675 FQMALSDDGRGLALHKVRQIAIEKQLISVDQV--LTDAEIARLILQPGFSTRSEVTEVSG 732 + ++DDG+G+ +R A+EK L+ D LTD E LI PGFST++E+++VSG Sbjct: 517 ILLMITDDGKGMDAEVLRNKAVEKGLLERDAADRLTDLECYNLIFAPGFSTKTEISDVSG 576 Query: 733 RGVGMDAVLDFVTREHGKIEIRFMDSEEGAAFRAFQIIVMLPENVAV 779 RGVGMD V +++ +G + + S++G+ + I++ +P +A+ Sbjct: 577 RGVGMDVVKTKISQLNGTVNVF---SQKGSGSK---IVIKVPLTLAI 617