BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0004.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 258 1e-68 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 101 3e-21 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 100 4e-21 BH3680 [G] COG1653 ABC-type sugar transport system, periplasmic ... 91 6e-18 SMc02471 [G] COG1653 ABC-type sugar transport system, periplasmi... 89 1e-17 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 459 Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/354 (37%), Positives = 202/354 (57%), Gaps = 2/354 (0%) Query: 8 VKVSFIEEEAYKVQLPGWLSTQAPDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTY 67 V V+ ++ EA+K + +L APD+ W +G RM + +RGL +D+S+ ++K + Sbjct: 107 VVVNNMDHEAHKTAIRNYLVAGAPDVCFWFSGNRMRAFVTRGLFDDISDLFEKEKYADVL 166 Query: 68 ASTKEASSWQGKQYSAPTVYYSWGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIA 127 +T + + +GKQY PT WGMFYRKD+F + G+ P SWD+ L +K K+A + Sbjct: 167 GATAGSVTVEGKQYGLPTGGTLWGMFYRKDVFDEHGLKV-PTSWDDLLAFGEKCKSASLT 225 Query: 128 PIAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYF 187 P+A+G +D W AGWFD ++LRING H LM G++AYTD +K V+ W+ LI +F Sbjct: 226 PVAMGTKDLWPAAGWFDQMNLRINGLDKHFALMNGEMAYTDETLKPVFEHWEELIKQGFF 285 Query: 188 IDNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEG 247 + S+ A FL Q +A MM +G F+ FP + P++ + FP+I+ + EE Sbjct: 286 TPDHTSFGWQEAGAFLAQKRAGMMNLGAFVRAAFPRQDLPQLTFAPFPVIEDGLGRYEEF 345 Query: 248 PTESIHIPAKARNKTDARRFIAFVGTPAISAKLADGLGSLPANSKSPAPADPISRIGFEI 307 S+HIP A+NK AR F+ P A + G++P + P DP+ E Sbjct: 346 SLNSVHIPTNAKNKPGAREFLTHFYKPENLAAYLEPGGNVPPRNDLPPSKDPLVNAAVES 405 Query: 308 LSNAKGGISQFYDRDMTKEMADEGMKGMQKFVSDPTKIDDVLNELEQSRKRIYK 361 L A G SQFYDRD +MA G+ G Q+F++ P + D +L LE +R+RI+K Sbjct: 406 L-KAVAGTSQFYDRDTDPDMAQAGLVGFQEFMARPERRDAILQRLEGTRRRIFK 458 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Bsu Bacillus subtilis Length = 422 Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 168/363 (46%), Gaps = 17/363 (4%) Query: 6 LDVKVSFIEEEAYKVQLPGWLSTQAPDIINWHNGERMAFYASRG-LLEDLSEDWKKNG-W 63 +D+++ + ++YK ++ L T +P I + + AF RG DLS +K + W Sbjct: 63 IDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDW 122 Query: 64 DSTYASTKEAS-SWQGKQYSAPTVYYSWGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLK 122 S ++ +++ KQY P + FY KD+F+K+ + PK+WDE ++ KKLK Sbjct: 123 SSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLDP-PKTWDELIDVSKKLK 181 Query: 123 AAGIAPIAVGGRDAWTLAGWFDYLDLR-INGNAFHQQLMAGDVAYTDPRVKKVYTAWKSL 181 G PI+ G + WT++ + L+ R ++ + A +TD K + L Sbjct: 182 EHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQEL 241 Query: 182 IDNKYFIDNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGF-PAKLAPEMGYFQFPIIDAN 240 + YF + S D + + GK+AM+ T K P L G F FP I Sbjct: 242 M--PYFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVEPVNL----GMFPFPEISGQ 295 Query: 241 VPTAE--EGPTESIHIPAKARNKTDARRFIAFVGTPAISAKLADGLGSLPA--NSKSPAP 296 ++E G E I ++ ++ +A F+ F+ + + KL +G A + + Sbjct: 296 KGSSEALTGAPEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKDVGKYSAVQGTATEEN 355 Query: 297 ADPISRIGFEILSNAKGGISQFYDRDMTKEMADEGMKGMQKFVSDPTKIDDVLNELEQSR 356 A I R + + +AK + ++D D+ E+AD + G+Q+ + V+ ++++ Sbjct: 356 ATAIQREAVQHIVDAKSMVP-WFDMDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAA 414 Query: 357 KRI 359 K++ Sbjct: 415 KQV 417 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Pho Pyrococcus horikoshii Length = 441 Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 159/335 (47%), Gaps = 22/335 (6%) Query: 26 LSTQAPDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYASTKEASSWQGKQYSAP- 84 L+ + PD H G MA Y L + + W ++ + ++ + Y+ P Sbjct: 97 LAGKPPDTFQVHAGYEMARYIKANQLTPIDDIWTEDMKKNYPKVIQQMVIFNNHYYAVPI 156 Query: 85 TVYYSWGMFYRKDLFKKVGI-AAEPKSWDEFLEACKKLKAAGIAPIAVGGRDAWTLAGWF 143 V+ + ++Y K +FKK GI + K+ D+ +KLK G+ P A+G R+ W F Sbjct: 157 NVHRANVIWYNKQIFKKYGIDPSSIKTIDDLFAVAEKLKENGVTPFALGDRNKWPATQVF 216 Query: 144 DYLDLRINGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFIDNALSYDLDGAQPFL 203 + + + + G ++++ + G+++ DP +KKV + ++ Y + + D A + Sbjct: 217 EVMLVAVGGVDYYEKFINGEISANDPTLKKVLEYFVKYVE--YSNPDHAAKTWDEACALV 274 Query: 204 FQGKAAMMLMGTFIAKGFPAK-LAPEMGYFQFPIIDANVPTAEEGPTESIHIPAKARNKT 262 ++G+AAM LMG + F AK P + Y PI + ++ +PAKA + Sbjct: 275 YKGEAAMTLMGDWANGYFKAKGWKPNVDYGAIPIPAG----VYDLVIDTFVLPAKAAHPN 330 Query: 263 DARRFIAFVGTPAISAKLADGLGSLPANSKSPA-PADPISRIGFEILSNAKGGISQFYDR 321 A+++++F+GT GS+P +PA P DPI + + LS++ + Sbjct: 331 AAKKWLSFIGTVEAQNTFNPIKGSIPPRKDAPADPYDPIQKSFIKELSSS--------ET 382 Query: 322 DMTKEMADEGMKGMQKFVSDPTKIDDVLNELEQSR 356 + +A G + F++D ++D+++EL S+ Sbjct: 383 KLIPSIA-HGSAVPEAFLAD---LNDIISELATSK 413 >BH3680 [G] COG1653 ABC-type sugar transport system, periplasmic component Bha Bacillus halodurans Length = 438 Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 25/350 (7%) Query: 6 LDVKVSFIEEEAYKVQLPGWLST-QAPDI-INWHNGERMAFYASRGL--LEDLSEDWKKN 61 + V++ +E E YK +L S+ Q PD+ + W G + + L+D+ ED + Sbjct: 75 ITVELEVLENEQYKNKLQVISSSNQLPDVGMTWPAGFLEPYVNGKLFTPLDDILEDGLR- 133 Query: 62 GWDSTYASTKEASSWQGKQYSAPTVYYSWGMFYRKDLFKKVGIAAEPKSWDEFLEACKKL 121 + A T EA G+ Y+ P +FY K +F + G+ A P++++EF+ L Sbjct: 134 --EQFVAGTVEAYEIDGQAYALPLELNIAPVFYNKAIFDEYGLEA-PETYEEFIHVVDTL 190 Query: 122 KAAGIAPIAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGDVAYTDPRVKKVYTAWKSL 181 G+ PIA+G RD WT + W+ Y+ RI G + ++ D R+ + L Sbjct: 191 VENGVTPIALGNRDRWTGSLWYMYMAERIGGADALNSAIDRSGSFEDERLIDAAAHIQEL 250 Query: 182 IDNKYFID--NALSYDLDGAQPFLFQGKAAMMLMGTFIAKGF------PAKLAPEMGYFQ 233 ID FI N LS D + F+ G AAM L+G++ + P + + +F+ Sbjct: 251 IDRDAFIRGFNGLS-DQEAKAEFM-NGGAAMYLIGSWDLPNYTTNEEVPQEFRDGISFFK 308 Query: 234 FPIID---ANVPTAEEGPTESIHIPAKARNKTDARRFIAFVGTPAISAKLADGLGSLPAN 290 FP ID ++ + GP + + + K +A++F+ + + D G +P Sbjct: 309 FPTIDGGEGDINSWVGGPGVGLFVAENSDVKEEAKQFVKYFIEEWGKYSVEDA-GVIPGT 367 Query: 291 SKSPAPADPISRIGFEILS--NAKGGISQFYDRDMTKEMADEGMKGMQKF 338 + D + + ++L N I+ F D M+ +A+ + +Q Sbjct: 368 QVNTDEVD-LPDLFIDVLDELNHASDITLFADVQMSASVAETHLNMIQSL 416 >SMc02471 [G] COG1653 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 434 Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 19/257 (7%) Query: 6 LDVKVSFIEEEAYKVQLPGWL-STQAPDIINWHNGERMAFYASRGLLEDLSEDWKKNG-- 62 +D+++ F+E EA+K +LP L S AP G + + G L DL+E + +G Sbjct: 68 VDIQLQFLENEAFKAKLPTLLQSDDAPHFFYSWGGGVLKQQSETGALMDLTEAMRADGGA 127 Query: 63 WDSTY-ASTKEASSWQGKQYSAPTVYYSWGMFYRKDLFKKVGIAAEP-KSWDEFLEACKK 120 W+ +Y + + ++ + Y+ P + FY K+LF+K G+ AE K+WD+FL A K Sbjct: 128 WEKSYNPAALKGFTFDDRIYAVPFKMGTISFFYNKELFQKGGVKAEDIKTWDDFLTAVKT 187 Query: 121 LKAAGIAPIAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGD-VAYTDPRVKKVYTAWK 179 LK AGI PIA GG D W L ++ YL +R G + + + P + K Sbjct: 188 LKEAGITPIAGGGGDKWPLHFYWSYLVMRNGGQQVFEDAKNNEGEGFLQPAIIKAGEQLA 247 Query: 180 SLIDNKYFIDNALSYDLDGAQPFLFQGKAAMML----------MGTFIAKGFPAKLAPEM 229 L + F L + GKAAM+L + KG A+ + Sbjct: 248 ELGKLEPFQGGYLGANWPQTLGLFGDGKAAMILSFENTEATQRANSGDGKGLAAE---NI 304 Query: 230 GYFQFPIIDANVPTAEE 246 G F FP ++ A + Sbjct: 305 GRFPFPAVEGGAGAATD 321