BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0001.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2153 [G] COG3839 ABC-type sugar transport systems, ATPase comp...   102   3e-22
RSc2140 [G] COG3839 ABC-type sugar transport systems, ATPase com...    99   3e-21
YPO0609 [G] COG3839 ABC-type sugar transport systems, ATPase com...    95   4e-20
TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase comp...    95   4e-20
PAB0123 [G] COG3839 ABC-type sugar transport systems, ATPase com...    95   5e-20

>DR2153 [G] COG3839 ABC-type sugar transport systems, ATPase components Dra
           Deinococcus radiodurans
          Length = 455

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 55/67 (82%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           VP   R +AMVFQ+YAL+PHM VYENM+FGL L K P+ EI+++VR+AARILQ+E LL R
Sbjct: 106 VPPKDRDIAMVFQNYALYPHMNVYENMAFGLKLRKTPREEIDKRVRDAARILQIEHLLGR 165

Query: 61  KPKELSA 67
           KPKELS 
Sbjct: 166 KPKELSG 172


>RSc2140 [G] COG3839 ABC-type sugar transport systems, ATPase components Rso
           Ralstonia solanacearum
          Length = 369

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 56/66 (84%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           VPSA+R +AMVFQSYAL+PHMT+Y+NM+FGL LA   KAEI+Q V+ AA+IL ++ LL R
Sbjct: 70  VPSAKRGIAMVFQSYALYPHMTLYDNMAFGLKLAGAKKAEIDQAVKGAAKILHIDHLLDR 129

Query: 61  KPKELS 66
           KPK+LS
Sbjct: 130 KPKQLS 135


>YPO0609 [G] COG3839 ABC-type sugar transport systems, ATPase components Ype
           Yersinia pestis
          Length = 372

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 5/82 (6%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           V    R +AMVFQ+YAL+PHMTVYENM+FGL +AK  KAEI Q+V EAA +L++ +LLQR
Sbjct: 72  VQPKDRGIAMVFQNYALYPHMTVYENMAFGLKVAKKTKAEIAQRVNEAAELLEITDLLQR 131

Query: 61  KPKELSALAQDVGHCGRGDTGQ 82
           KPKE+S      G C R   G+
Sbjct: 132 KPKEMSG-----GQCQRVALGR 148


>TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase components Tma
           Thermotoga maritima
          Length = 369

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           V    R +AMVFQ+YAL+PHMTVYENM+FGL L K PK EI+++VREAA+IL +E LL R
Sbjct: 73  VEPKDRDIAMVFQNYALYPHMTVYENMAFGLKLRKYPKDEIDRRVREAAKILGIENLLDR 132

Query: 61  KPKELSA 67
           KP++LS 
Sbjct: 133 KPRQLSG 139


>PAB0123 [G] COG3839 ABC-type sugar transport systems, ATPase components Pab
           Pyrococcus abyssi
          Length = 371

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           VP  +R VAMVFQSYAL+PHMTVY+N++F L L K+PK EI+++VRE A +L L ELL+R
Sbjct: 76  VPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDRRVREVAEMLGLTELLKR 135

Query: 61  KPKELSA 67
           KP+ELS 
Sbjct: 136 KPRELSG 142