BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0040.p         (65 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1580 [J] COG0292 Ribosomal protein L20 Rso Ralstonia solanace...   110   1e-24
aq_952 [J] COG0292 Ribosomal protein L20 Aae Aquifex aeolicus          91   6e-19
PA2741 [J] COG0292 Ribosomal protein L20 Pae Pseudomonas aeruginosa    89   3e-18
VCA0290 [J] COG0292 Ribosomal protein L20 Vch Vibrio cholerae          88   5e-18
NMA0932 [J] COG0292 Ribosomal protein L20 NmA Neisseria meningit...    86   2e-17

>RSc1580 [J] COG0292 Ribosomal protein L20 Rso Ralstonia solanacearum
          Length = 118

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 58/63 (92%)

Query: 1   VFRALWIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKA 60
           VFRALWIARINA AR HG++YS FMNGLKKA+IELDRKVL+DMA+ DK AFAAIVNQVKA
Sbjct: 56  VFRALWIARINAGAREHGLSYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVNQVKA 115

Query: 61  NIA 63
           N+A
Sbjct: 116 NVA 118


>aq_952 [J] COG0292 Ribosomal protein L20 Aae Aquifex aeolicus
          Length = 118

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 2   FRALWIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVK 59
           FR LWIARINAA R++G+ YS F+NGLKKA IELDRK+LADMAV D  AF  +VN+VK
Sbjct: 55  FRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVK 112


>PA2741 [J] COG0292 Ribosomal protein L20 Pae Pseudomonas aeruginosa
          Length = 118

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 53/62 (85%)

Query: 2   FRALWIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKAN 61
           FRALWIARINA AR +G++YS  + GLKKAAIE+DRKVLAD+AV +KAAF AIV + KA+
Sbjct: 57  FRALWIARINAGARQNGLSYSRLIAGLKKAAIEIDRKVLADLAVNEKAAFTAIVEKAKAS 116

Query: 62  IA 63
           +A
Sbjct: 117 LA 118


>VCA0290 [J] COG0292 Ribosomal protein L20 Vch Vibrio cholerae
          Length = 117

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 2   FRALWIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKA 60
           FR LWIARINAAAR +G++YS F+NGLKKA+IE+DRK+LAD+AV DKAAFA +V + K 
Sbjct: 57  FRQLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKG 115


>NMA0932 [J] COG0292 Ribosomal protein L20 NmA Neisseria meningitidis Z2491
          Length = 119

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 51/60 (85%)

Query: 5   LWIARINAAARSHGVTYSVFMNGLKKAAIELDRKVLADMAVTDKAAFAAIVNQVKANIAA 64
           LWI RINA AR +G++YS FMNGLK+A+IE+DRKVLAD+AV DKAAFA +V + KA +AA
Sbjct: 60  LWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAALAA 119