BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0027.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0169 Non COG 96 6e-20 XF2370 [M] COG1596 Periplasmic protein involved in polysaccharid... 82 1e-15 VC0936 [M] COG1596 Periplasmic protein involved in polysaccharid... 81 2e-15 yccZ [M] COG1596 Periplasmic protein involved in polysaccharide ... 81 2e-15 ZyccZ [M] COG1596 Periplasmic protein involved in polysaccharide... 81 2e-15 >CC0169 Non COG Length = 186 Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 3/132 (2%) Query: 21 AQADDILLGPGDVIRVKVYGSDDLSLETRISEAGVISFPLVGEVKIGGLSTAQAETKIAG 80 AQA D LLGPGD +RV VYG + LS E ++ G++S PL+GE+K+GG++ Q +T + Sbjct: 32 AQAVDYLLGPGDKVRVTVYGEESLSGEFFVAGTGLMSLPLIGEIKVGGMTVGQFQTAVQD 91 Query: 81 LLKKGGYLVNPQVNILVTVPQSQMVSVLGQVSKPGRYPLDGKRNVADVIALAGGVTPDGG 140 LK GYL +P+V+ V + +LG+V KPG YP V + +A AGG T Sbjct: 92 KLKD-GYLRDPRVSAEVLT--FRPFYILGEVEKPGTYPYTSGLTVLNAVATAGGFTYRAD 148 Query: 141 DAVTIVRKNGGA 152 + +++NG A Sbjct: 149 KKIVYIKRNGDA 160 >XF2370 [M] COG1596 Periplasmic protein involved in polysaccharide export Xfa Xylella fastidiosa 9a5c Length = 217 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 6/167 (3%) Query: 28 LGPGDVIRVKVYGSDDLSLETRISEAGVISFPLVGEVKIGGLSTAQAETKIAGLLKKGGY 87 + PGD++ +KV+ DDL + R+ G I+ PL+G + + A+ ET IA + GY Sbjct: 37 VSPGDLLLIKVFQVDDLERQVRVDNTGRITLPLLGSIDVSNKGAAELETLIANRY-RSGY 95 Query: 88 LVNPQVNILVTVPQSQMVSVLGQVSKPGRYPLDGKR-NVADVIALAGGV-TPDGGDAVTI 145 L NPQV++ + ++ V+V G V++PG YPL G + VIA A G+ T V + Sbjct: 96 LQNPQVSVFIQEANARRVTVTGAVTEPGSYPLIGSNLTLQQVIAQAKGINTLASLQNVVV 155 Query: 146 VRKNGGAVSKQLVDIYSITHSGDTSELPEVQANDVIYVERS-LRFYI 191 R G D+ I D PE+ D++ V RS +R ++ Sbjct: 156 FRTVKGQKMLARFDLARIERGKDPD--PEIYPGDLVVVYRSDMRLFL 200 >VC0936 [M] COG1596 Periplasmic protein involved in polysaccharide export Vch Vibrio cholerae Length = 175 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 6/121 (4%) Query: 18 SLLAQADDIL-LGPGDVIRVKVYGSDDLSLETRISEAGVISFPLVGEVKIGGLSTAQAET 76 SL DD LG GD IR++VY +LS ETR+S+ G I +P +G +++ G + + +T Sbjct: 17 SLAVANDDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKT 76 Query: 77 KIA-GLLKKGGYLVNPQVNILVTVPQSQMVSVLGQVSKPGRYPLDGKRNVADVIALAGGV 135 I GLL GYL+NP N+ V++ + + V GQV KPG YP V I +AGG Sbjct: 77 TIHDGLLD--GYLINP--NVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITIAGGF 132 Query: 136 T 136 T Sbjct: 133 T 133 >yccZ [M] COG1596 Periplasmic protein involved in polysaccharide export Eco Escherichia coli K12 Length = 379 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 36/261 (13%) Query: 28 LGPGDVIRVKVYGSDDLSLE-----------TRISEAGVISFPLVGEVKIGGLSTAQAET 76 +G GDV+ V V+ +L+ ++ G I +P +G +K+ G + Q Sbjct: 87 IGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRN 146 Query: 77 KIAGLLKKGGYLVNPQVNILVTVPQSQMVSVLGQVSKPGRYPLDG-KRNVADVIALAGGV 135 +I L + +PQV++ V +SQ V G+VSK G+ P+ + D I AGG+ Sbjct: 147 EITARLD--SVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGL 204 Query: 136 TPDGGDAVTIVRKNGGAVSKQLVDIYSITHSGDTSELPEVQANDVIYVERS--LRFYIYG 193 T D ++ +NG K V++Y++ GD + + D++++ R+ L+ ++ G Sbjct: 205 TADADWRNVVLTQNG---VKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMG 261 Query: 194 EVQRPGMYKLER-GTTLLQALSVGGGLTQR-GTERGLVVKRQV----DGKLEELH-LNKD 246 EV + K++R G TL +AL G+ Q G+ V R +GK+ ++ LN Sbjct: 262 EVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAK 321 Query: 247 DP----------LQADDVVYV 257 D L+ D+VYV Sbjct: 322 DASAMILGTEFQLEPYDIVYV 342 >ZyccZ [M] COG1596 Periplasmic protein involved in polysaccharide export EcZ Escherichia coli O157:H7 EDL933 Length = 379 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 36/261 (13%) Query: 28 LGPGDVIRVKVYGSDDLSLE-----------TRISEAGVISFPLVGEVKIGGLSTAQAET 76 +G GDV+ V V+ +L+ ++ G I +P +G +K+ G + Q Sbjct: 87 IGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRN 146 Query: 77 KIAGLLKKGGYLVNPQVNILVTVPQSQMVSVLGQVSKPGRYPLDG-KRNVADVIALAGGV 135 +I L + +PQV++ V +SQ V G+VSK G+ P+ + D I AGG+ Sbjct: 147 EITARLD--SVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGL 204 Query: 136 TPDGGDAVTIVRKNGGAVSKQLVDIYSITHSGDTSELPEVQANDVIYVERS--LRFYIYG 193 T D ++ +NG K V++Y++ GD + + D++++ R+ L+ ++ G Sbjct: 205 TADADWRNVVLTQNG---VKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMG 261 Query: 194 EVQRPGMYKLER-GTTLLQALSVGGGLTQR-GTERGLVVKRQV----DGKLEELH-LNKD 246 EV + K++R G TL +AL G+ Q G+ V R +GK+ ++ LN Sbjct: 262 EVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAK 321 Query: 247 DP----------LQADDVVYV 257 D L+ D+VYV Sbjct: 322 DASAMILGTEFQLEPYDIVYV 342