BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0011.p         (190 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2718 [S] COG2353 Uncharacterized conserved protein Rso Ralsto...   201   8e-52
CC3391_2 Non COG                                                       83   3e-16
STM1157 [S] COG2353 Uncharacterized conserved protein Sty Salmon...    65   1e-10
RSp1238 [S] COG2353 Uncharacterized conserved protein Rso Ralsto...    64   2e-10
yceI [S] COG2353 Uncharacterized conserved protein Eco Escherich...    62   5e-10

>RSc2718 [S] COG2353 Uncharacterized conserved protein Rso Ralstonia
           solanacearum
          Length = 189

 Score =  201 bits (511), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 8   RFLKPTLVAL-AAAAFTLSAHAAPLKVDAAKSSVTATFKQLNVPVDAKFKKFNAAIDFDA 66
           R  +P  + L AA A +++A +A  +VDAAKSSVTAT KQL VP+D KF KF+AA+ ++ 
Sbjct: 4   RVARPRALGLIAAGALSIAALSAIAQVDAAKSSVTATGKQLGVPMDIKFGKFDAAVSYNP 63

Query: 67  AKPEQGKASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVASSIKAAGAGKYDVA 126
           A      A V+IDV+S D+G+  YN E++KK+WF+AA++PKA+FV+S+ K    GK +V 
Sbjct: 64  ANLAASTAKVDIDVSSVDVGDKAYNDELKKKDWFDAAKYPKATFVSSAFKPGAGGKVEVV 123

Query: 127 GKLTIKGKSTDVSFPLTVKKDGAAQVFDGTLPIKRLTYNVGEGEWKDTGMVADEVTIKFH 186
           GKLTIKG + DV+ P TVK+DGA+QVF+G LPIKR  ++VG+GEWKDT +VAD+VTIKF 
Sbjct: 124 GKLTIKGVTQDVTAPFTVKQDGASQVFEGALPIKRNAFHVGDGEWKDTSVVADDVTIKFR 183

Query: 187 IV 188
           +V
Sbjct: 184 VV 185


>CC3391_2 Non COG
          Length = 140

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 75/138 (54%)

Query: 53  AKFKKFNAAIDFDAAKPEQGKASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVA 112
            +F+++ A I F     ++ + +V +D+AS + G+A+ +  +  +++ + A  PKA F A
Sbjct: 1   GRFQRWTAEILFSPEALDRSEVTVGVDLASTETGDAQRDASLTGEDFLDTADHPKAVFTA 60

Query: 113 SSIKAAGAGKYDVAGKLTIKGKSTDVSFPLTVKKDGAAQVFDGTLPIKRLTYNVGEGEWK 172
           +  +  G G+Y   G L ++G    +S P ++K DG      G   + R T+ VG+GEW 
Sbjct: 61  TKFRKTGEGRYVADGTLDLRGVKKPLSLPFSLKIDGDTATASGVTTLDRTTFGVGQGEWA 120

Query: 173 DTGMVADEVTIKFHIVAQ 190
            T  +A +V + F + A+
Sbjct: 121 STDEIAAQVKVSFKLTAK 138


>STM1157 [S] COG2353 Uncharacterized conserved protein Sty Salmonella
           typhimurium LT2
          Length = 191

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 17  LAAAAFTL-SAHAAPLKVDAAKSSVTATFKQLNVPVD---AKFKKFNAAIDFDAAKPEQG 72
           LA+  FT  SA AA  K+D         F+  ++        FK F+    FD   P   
Sbjct: 10  LASLLFTTGSAVAAEYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPSAD 69

Query: 73  KASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVASSIKAAGAGKYDVAGKLTIK 132
           K +V I+  S D   AE +K ++  E+ N A+FP+A+F ++S+K  G  + D+ G LT+ 
Sbjct: 70  KVNVTINTNSVDTNHAERDKHLRSAEFLNVAKFPQATFTSTSVKKEGD-ELDITGNLTLN 128

Query: 133 GKSTDVSFPLTVK 145
           G    V+ P+T++
Sbjct: 129 G----VTKPVTLE 137


>RSp1238 [S] COG2353 Uncharacterized conserved protein Rso Ralstonia
           solanacearum
          Length = 195

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 55  FKKFNAAIDFDAAKPEQGKASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVASS 114
           F+KF   ++FD    E    ++ ID AS D      + E++   W +A   P+ +FV++S
Sbjct: 54  FRKFETQLNFDDKDIEAASVTIAIDTASIDTANDLRDAELRGPTWLDARANPRITFVSTS 113

Query: 115 IKAAGAGKYDVAGKLTIKGKSTDVSFPLTV 144
           ++ A    Y ++G LT++GK+  V+F  T+
Sbjct: 114 VRHAEGNHYVISGNLTVRGKTLPVAFQTTL 143


>yceI [S] COG2353 Uncharacterized conserved protein Eco Escherichia coli
           K12
          Length = 191

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 10  LKPTLVALAAAAFTLSAH---AAPLKVDAAKSSVTATFKQLNVPVD---AKFKKFNAAID 63
           +K +L+ L  A+   SA    AA  K+D         F+  ++        FK F+    
Sbjct: 1   MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFT 60

Query: 64  FDAAKPEQGKASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVASSIKAAGAGKY 123
           FD   P   K +V I+  S D   AE +K ++  ++ N A++P+A+F ++S+K  G  + 
Sbjct: 61  FDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKYPQATFTSTSVKKDGD-EL 119

Query: 124 DVAGKLTIKGKSTDVSFPLTVK 145
           D+ G LT+ G    V+ P+T++
Sbjct: 120 DITGDLTLNG----VTKPVTLE 137