BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0006.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia s...   162   3e-40
XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...   119   3e-27
NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria m...   102   4e-22
NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria m...   102   4e-22
XF0012 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...    97   1e-20

>RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia solanacearum
          Length = 137

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 110/135 (81%), Gaps = 1/135 (0%)

Query: 1   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 60
           M  G+  D+DD+   EIN TPLVDVMLVLLIIFIITIPV+NHAVKIDLP+A+++PD  KP
Sbjct: 1   MAFGTF-DNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKP 59

Query: 61  ESINLSIDAAGNVFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSA 120
           +S+N+ IDA G V+WN + +D + L A I  AA++QPQPEMHLRA+R+ +YE+VAQVM+A
Sbjct: 60  QSVNVEIDAKGLVYWNNQPVDDATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAA 119

Query: 121 AQSGGLTKIGFVTDP 135
            Q GGL +IGFVT+P
Sbjct: 120 IQRGGLARIGFVTEP 134


>XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 140

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 86/120 (71%), Gaps = 3/120 (2%)

Query: 16  EINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKAS---SQPDQVKPESINLSIDAAGN 72
           +IN TPLVDVMLVLLIIFIIT P+M+H +K++LP+A+      ++ +   I L++   G+
Sbjct: 14  DINVTPLVDVMLVLLIIFIITAPLMSHKIKVELPQANLVKKNNEEKRSNPITLAVKEDGS 73

Query: 73  VFWNEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKVAQVMSAAQSGGLTKIGFV 132
           ++WN+ +I  +EL  R +VAAQ+ PQP ++LR +RTT+  K+++++  AQ  G+  IGF+
Sbjct: 74  LYWNDAQISENELEQRFSVAAQQTPQPPLNLRGDRTTKMSKISKIIKVAQGQGIMDIGFI 133


>NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria meningitidis
           MC58
          Length = 144

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 6/140 (4%)

Query: 1   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQP---DQ 57
           M  GS++  DD    +IN TPLVDVMLVLLI+F+IT+PV+ H++ ++LP AS Q    D+
Sbjct: 1   MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK 60

Query: 58  VKPESINLSIDAAGNVFW---NEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKV 114
              + + L+IDA G  +    +  K++  E+ +R+  A ++     + + A++  +Y+ V
Sbjct: 61  QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV 120

Query: 115 AQVMSAAQSGGLTKIGFVTD 134
            + + AA+  G+TKIGFVT+
Sbjct: 121 NKALEAARQAGITKIGFVTE 140


>NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria meningitidis
           Z2491
          Length = 144

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 6/140 (4%)

Query: 1   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQP---DQ 57
           M  GS++  DD    +IN TPLVDVMLVLLI+F+IT+PV+ H++ ++LP AS Q    D+
Sbjct: 1   MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK 60

Query: 58  VKPESINLSIDAAGNVFW---NEEKIDSSELSARIAVAAQKQPQPEMHLRAERTTQYEKV 114
              + + L+IDA G  +    +  K++  E+ +R+  A ++     + + A++  +Y+ V
Sbjct: 61  QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV 120

Query: 115 AQVMSAAQSGGLTKIGFVTD 134
            + + AA+  G+TKIGFVT+
Sbjct: 121 NKALEAARQAGITKIGFVTE 140


>XF0012 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 136

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 5/121 (4%)

Query: 16  EINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKA---SSQPDQVKPESINLSIDAAGN 72
           +IN TPLVDVMLVLLIIFI+T P+M + + +DLP+        D   P  I L IDA+  
Sbjct: 14  DINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQPVLNPPPMDHEPPPPIQLKIDASNQ 73

Query: 73  VFWNEEKIDSSELSARIAVAAQKQP--QPEMHLRAERTTQYEKVAQVMSAAQSGGLTKIG 130
           V+WN   +  S+L  R+    QK P  QP++ + A   ++YE +A+V++AA++  + KIG
Sbjct: 74  VYWNNTLVAVSQLQQRMEEVVQKDPTNQPQLQIDANPDSEYEVIAKVLAAAKNADMKKIG 133

Query: 131 F 131
           F
Sbjct: 134 F 134