BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0548.p (714 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1011 [L] COG0556 Helicase subunit of the DNA excision repair ... 924 0.0 NMA1545 [L] COG0556 Helicase subunit of the DNA excision repair ... 813 0.0 NMB1331 [L] COG0556 Helicase subunit of the DNA excision repair ... 811 0.0 PA3138 [L] COG0556 Helicase subunit of the DNA excision repair c... 732 0.0 HI1247 [L] COG0556 Helicase subunit of the DNA excision repair c... 720 0.0 >RSc1011 [L] COG0556 Helicase subunit of the DNA excision repair complex Rso Ralstonia solanacearum Length = 696 Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/536 (83%), Positives = 486/536 (90%), Gaps = 1/536 (0%) Query: 1 MAELTPINTELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT 60 M +L+ + + DESKFVTF SPF+LYQ +PPAGDQP AI +LVEG+ DGL YQTLLGVT Sbjct: 1 MTDLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVT 60 Query: 61 GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY 120 GSGKTYTMAN IA+ GRPAIVFAPNKTLAAQLYSEFREFFP NAVEYFVSYYDYYQPEAY Sbjct: 61 GSGKTYTMANVIAQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAY 120 Query: 121 VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL 180 VPQRDLFIEKDSS+NEHIEQMRLS TKSL+ERRDVVIVATVSAIYGIGNP EYHQMILTL Sbjct: 121 VPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPTEYHQMILTL 180 Query: 181 RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI 240 R DK+SQRDVIARLI MQYTRNE DF RGTFRVRGDT+D+FPAEHAE+AVR+E FDDE+ Sbjct: 181 RTGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEV 240 Query: 241 DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI 300 DSLQLFDPLTGRVRQKI RFT+YP SHYVTPR TVLRAI TIK EL ERL+FF +ENKL+ Sbjct: 241 DSLQLFDPLTGRVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLV 300 Query: 301 EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAVMFLDESH 360 E QRLEQRTRFD+EM+ E+GF KGIENYSRHLSGA+PG+PPPTLVDYLP DA+MFLDESH Sbjct: 301 EAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESH 360 Query: 361 VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYEN 420 VLIGQLNGMYNGDRARK L YGFRLPSALDNRPLKF EFE KMRQ +FVSATPADYE Sbjct: 361 VLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAEFEGKMRQVVFVSATPADYEK 420 Query: 421 THA-DQVVEQVVRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQ 479 A D+VVEQVVRPTGLVDPII VRPATTQVDDL+ EI++R+ ERVLVTTLTKRMAEQ Sbjct: 421 QRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQ 480 Query: 480 LTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSL 535 LTEFLS+NG+KVRYLHSDIDTVERVEIIRDLRLGTFDV+VGINLLREGLDIPEVSL Sbjct: 481 LTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSL 536 >NMA1545 [L] COG0556 Helicase subunit of the DNA excision repair complex NmA Neisseria meningitidis Z2491 Length = 675 Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/521 (74%), Positives = 447/521 (85%) Query: 15 KFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIAR 74 + + +PDSPFKL+Q FPPAGDQP AI L+EG++DGL YQTLLGVTGSGKTYTMAN IA+ Sbjct: 2 EVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQ 61 Query: 75 LGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSI 134 GRPAI+ A NKTLAAQLY+E REFFP NAVEYFVSYYDYYQPEAYVP RDLFIEKDS+I Sbjct: 62 SGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAI 121 Query: 135 NEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIAR 194 NEHIEQMRLS TK+LM R DV+IVATVSAIYGIG+P EY QM+L+++ D + QRD+IA Sbjct: 122 NEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIAT 181 Query: 195 LIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVR 254 L+ MQY R ++DF RG+FRVRGD IDV+PAE +E A+RI FDDEID L +FDPL+G + Sbjct: 182 LVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLH 241 Query: 255 QKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIE 314 Q++ R+T++P SHYVTPR TVLRA ++IKEEL ER++FF KEN+ +E+QR+EQRTRFD+E Sbjct: 242 QRVGRYTVFPSSHYVTPRDTVLRACDSIKEELRERIDFFTKENRPVEQQRIEQRTRFDLE 301 Query: 315 MMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAVMFLDESHVLIGQLNGMYNGDR 374 M+ E+GF KGIENYSRH SG K G+PPPTL+DYLP +A+MF+DESHV + Q+ GMY GD Sbjct: 302 MLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPSNAIMFIDESHVTVTQIGGMYKGDA 361 Query: 375 ARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQVVEQVVRPT 434 +RK NLVDYGFRLPSA DNRPLKF EFEK M QT+FVSATPA YE HA QVVEQVVRPT Sbjct: 362 SRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPT 421 Query: 435 GLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYL 494 GLVDP I +RP TQVDDLM EINDRI K ERVLVTTLTKRMAEQLT++ S+ GIKVRYL Sbjct: 422 GLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYL 481 Query: 495 HSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSL 535 HSDIDTVERVEIIRDLRLG FDV+VGINLLREGLDIPEVSL Sbjct: 482 HSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSL 522 >NMB1331 [L] COG0556 Helicase subunit of the DNA excision repair complex Nme Neisseria meningitidis MC58 Length = 675 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/521 (74%), Positives = 446/521 (85%) Query: 15 KFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIAR 74 + + +P+SPFKL+Q FPPAGDQP AI L+EG++DGL YQTLLGVTGSGKTYTMAN IA+ Sbjct: 2 EVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQ 61 Query: 75 LGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSI 134 GRPAI+ A NKTLAAQLY+E REFFP NAVEYFVSYYDYYQPEAYVP RDLFIEKDS+I Sbjct: 62 SGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAI 121 Query: 135 NEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIAR 194 NEHIEQMRLS TK+LM R DV+IVATVSAIYGIG+P EY QM+L+++ D + QRD+IA Sbjct: 122 NEHIEQMRLSATKNLMTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIAT 181 Query: 195 LIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVR 254 L+ MQY R ++DF RG+FRVRGD IDV+PAE +E A+RI FDDEID L +FDPL+G + Sbjct: 182 LVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLI 241 Query: 255 QKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIE 314 Q++ R+T++P SHYVTPR TVLRA E+IKEEL ER+EFF +E + +E+QR+EQRTRFD+E Sbjct: 242 QRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLE 301 Query: 315 MMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAVMFLDESHVLIGQLNGMYNGDR 374 M+ E+GF KGIENYSRH SG K G+PPPTL+DYLP +A+MF+DESHV + Q+ GMY GD Sbjct: 302 MLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDA 361 Query: 375 ARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQVVEQVVRPT 434 +RK NLVDYGFRLPSA DNRPLKF EFEK M QTIFVSATPA YE HA QVVEQVVRPT Sbjct: 362 SRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHAGQVVEQVVRPT 421 Query: 435 GLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYL 494 GLVDP I +RP TQVDDLM EINDRI K ERVLVTTLTKRMAEQLT++ S+ GIKVRYL Sbjct: 422 GLVDPQIIIRPVATQVDDLMSEINDRIEKGERVLVTTLTKRMAEQLTDYYSELGIKVRYL 481 Query: 495 HSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSL 535 HSDIDTVERVEIIRDLRLG FDV+VGINLLREGLDIPEVSL Sbjct: 482 HSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSL 522 >PA3138 [L] COG0556 Helicase subunit of the DNA excision repair complex Pae Pseudomonas aeruginosa Length = 670 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/512 (67%), Positives = 422/512 (82%) Query: 24 FKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIARLGRPAIVFA 83 F+L F PAGDQP AI ++VEG+ GL +QTLLGVTGSGKT+++AN IA++ RP +V A Sbjct: 4 FQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63 Query: 84 PNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 143 PNKTLAAQLY EF+ FFPHN+VEYFVSYYDYYQPEAYVP D +IEKDSSIN+HIEQMRL Sbjct: 64 PNKTLAAQLYGEFKTFFPHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRL 123 Query: 144 SCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIARLIQMQYTRN 203 S TK+L+ER D +IVATVS+IYG+G+P Y +M+L L D++ QR+++ RL +QYTRN Sbjct: 124 SATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHLDRGDRIDQRELLRRLTSLQYTRN 183 Query: 204 EVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVRQKIPRFTIY 263 ++DF R TFRVRGD ID+FPAE A+R+E FDDE++SL FDPLTG V +K+PRFT Y Sbjct: 184 DMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243 Query: 264 PGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIEMMTEIGFTK 323 P SHYVTPR T+L A++ IK EL ERL++ R NKL+E QRLEQRTRFD+EM+ E+G+ Sbjct: 244 PKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCN 303 Query: 324 GIENYSRHLSGAKPGDPPPTLVDYLPKDAVMFLDESHVLIGQLNGMYNGDRARKVNLVDY 383 GIENYSR+LSG PG+PPPTL DYLP ++++ +DESHV + Q+ M+ GDR+RK LV+Y Sbjct: 304 GIENYSRYLSGRAPGEPPPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEY 363 Query: 384 GFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQVVEQVVRPTGLVDPIIAV 443 GFRLPSALDNRPL+F+E+E QTIFVSATP YE HA +V+EQVVRPTGLVDP I V Sbjct: 364 GFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEAEHAGRVIEQVVRPTGLVDPEIEV 423 Query: 444 RPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYLHSDIDTVER 503 RPA TQVDDL+ +I R+AKDERVLVTTLTKRMAE LT++L D+ ++VRYLHSDIDTVER Sbjct: 424 RPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDTVER 483 Query: 504 VEIIRDLRLGTFDVVVGINLLREGLDIPEVSL 535 VEIIRDLR G FDV+VGINLLREGLD+PEVSL Sbjct: 484 VEIIRDLRAGAFDVLVGINLLREGLDMPEVSL 515 >HI1247 [L] COG0556 Helicase subunit of the DNA excision repair complex Hin Haemophilus influenzae Length = 679 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/514 (66%), Positives = 419/514 (81%), Gaps = 1/514 (0%) Query: 23 PFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIARLGRPAIVF 82 PF L+ F P+GDQP AI+KL E + DGL +QTLLGVTGSGKT+T+AN IA+L RPA++ Sbjct: 9 PFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLL 68 Query: 83 APNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMR 142 APNKTLAAQLY+E + FFP NAVEYFVSYYDYYQPEAYVP D FIEKD+SIN+ IEQMR Sbjct: 69 APNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMR 128 Query: 143 LSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIARLIQMQYTR 202 LS TKS +ERRD ++VA+VSAIYG+G+P+ Y QM+L L+ + QR ++A+L ++QYTR Sbjct: 129 LSATKSFLERRDTIVVASVSAIYGLGDPDSYLQMMLHLQQGAIIDQRQILAKLAELQYTR 188 Query: 203 NEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVRQKIPRFTI 262 N+ F RGTFRVRG+ ID+FPAE + AVRIE FDDEI+ L LFDPLTG +PRFTI Sbjct: 189 NDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSFGAVPRFTI 248 Query: 263 YPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIEMMTEIGFT 322 YP +HYVTPR +L AIE IK+EL R E+F KE+KL+EEQR+ QRT+FDIEMM E+G+ Sbjct: 249 YPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYC 308 Query: 323 KGIENYSRHLSGAKPGDPPPTLVDYLPKDAVMFLDESHVLIGQLNGMYNGDRARKVNLVD 382 GIENYSR+LSG G+PPPTL DY+P DA++ +DESHV + Q+ GMY GDR+RK LV+ Sbjct: 309 SGIENYSRYLSGRNEGEPPPTLFDYMPPDAILIIDESHVTVPQIGGMYRGDRSRKETLVE 368 Query: 383 YGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYE-NTHADQVVEQVVRPTGLVDPII 441 YGFRLPSALDNRPL+F+EFE+ QTI+VSATP YE ++++QVVRPTGL+DP+I Sbjct: 369 YGFRLPSALDNRPLRFEEFERLAPQTIYVSATPGAYELEKSGSEIIDQVVRPTGLLDPLI 428 Query: 442 AVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYLHSDIDTV 501 +RP + QVDDL+ E R K+ERVLVTTLTK+MAE LT++L ++GI+VRYLHSDIDTV Sbjct: 429 EIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRYLHSDIDTV 488 Query: 502 ERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSL 535 ERVEIIRDLRLG FDV+VGINLLREGLDIPEVSL Sbjct: 489 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 522