BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0543.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3765 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 147 2e-35 CC1117 Non COG 146 7e-35 VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 139 6e-33 mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 135 1e-31 RSp0434 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 134 3e-31 >AGc3765 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 300 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 149/285 (52%), Gaps = 5/285 (1%) Query: 2 FEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPTEAALAFYAEV 61 FEAA R RS+TLA++EL +T AVS QI+ LE LF R+ R ++ T +Y + Sbjct: 14 FEAAARYRSVTLASNELNVTPGAVSLQIRELEARLGVQLFFRKPRSIQLTREGERYYGAL 73 Query: 62 KASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVTTTMSE 121 + + + A +L+ + V+ L P+ A++WL+PRL FQ +P ++VR++ T + Sbjct: 74 RTAFRMMREATAELTARSEITVLTLSCTPTFAVQWLMPRLPSFQQQHPHVDVRISVT-NR 132 Query: 122 YFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETH-PIRVPRDFVEVPLI 180 + +D D+ + G + +RF+DD ++P+ +P LE + P+R D VPL+ Sbjct: 133 LVDFSRDDVDLAVRHGFGRYEGLESIRFIDDSTLPVCAPQLLEKYGPLREAGDLKSVPLL 192 Query: 181 HLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLALVDDDLAAG 240 H +R+ W +WL AG + GTV+ S +L AA G+ + +LV +L G Sbjct: 193 HDENRN-EWRRWLEAAGASEVDASGGTVFIDSNGALDAAKAGHGIALTRRSLVSRELVEG 251 Query: 241 RLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLKQMGQASS 285 L+ F + Y ++Y NP L T I W+ + QA S Sbjct: 252 ALIAPFGTDMASTLAYFLVYPRRMLDNPDLVTLIDWM--LSQAGS 294 >CC1117 Non COG Length = 340 Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 6/282 (2%) Query: 2 FEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPTEAALAFYAEV 61 FEAA R + + AA EL +T AVSQQI+ LE+Y LF R +G+ T+AA + Sbjct: 41 FEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQTALPAL 100 Query: 62 KASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVTTTMSE 121 + + DR+A AA L+ A R + L AAPS A +WL+PRL +F+ +P+++V ++ M E Sbjct: 101 REAFDRLAEAASLLTAAVDGRRLTLTAAPSFAAKWLVPRLGKFEQAHPQVDVWLSAGM-E 159 Query: 122 YFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPIRVPRDFVEVPLIH 181 + D+ I G + +R L + VP+ASP LE + + P D L+H Sbjct: 160 VVDFATGEVDMAIRYGSGRYPGLEVIRLLHETVVPVASPELLEQNALERPEDLQHHILLH 219 Query: 182 LSSRSA-----AWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLALVDDD 236 S A W+ WL G+ G + S L ++AAA +G+ + L D Sbjct: 220 DGSPDADDSCPDWAMWLAARGIRGVDGARGPRFNQSSLVIEAAANGRGIALAKRTLAQAD 279 Query: 237 LAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLK 278 L +GRLV F Y++++ + P +K F+ WLK Sbjct: 280 LDSGRLVIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWLK 321 >VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 306 Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 5/289 (1%) Query: 1 VFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPTEAALAFYAE 60 VFEAA R S T AA ELF+T +AVS QIK LEE+ LF R++R + TE +++ + Sbjct: 13 VFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQSYFLD 72 Query: 61 VKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVTTT-M 119 +K +A A ++L + + + PS A++WL+PRL+ F P I+VR+ M Sbjct: 73 IKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQEPDIDVRIKAVDM 132 Query: 120 SEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPH-FLETHPIRVPRDFVEVP 178 E + D DV I+ G + + +PL SP L P+ D Sbjct: 133 DE--GSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLGNKPMEKLSDLAYHT 190 Query: 179 LIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLALVDDDLA 238 L+H +SR W Q+ + G+ G ++ HS + LQAAA QGV +G L ++ Sbjct: 191 LLHDTSRK-DWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGNNVLAQPEID 249 Query: 239 AGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLKQMGQASSFD 287 AGRL+ F E+++ ++++ + TF W+ + ++ D Sbjct: 250 AGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKARSEQVD 298 >mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 303 Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 13/282 (4%) Query: 2 FEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPTEAALAFYAEV 61 F+AA R S + AA EL +TH AVS+ I+ +E+ LF R +R V T A+ EV Sbjct: 14 FDAAARHLSFSRAADELNLTHGAVSRAIRNIEDRLGIQLFDRGTRSVRLTAVGAAYAVEV 73 Query: 62 KASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVTTT--M 119 +LD+IA A + +R++ + + A RWL+PRL +F N I+VR+ T+ + Sbjct: 74 GKALDQIAAATIAATPDRSTRILNVSTSDGFAGRWLVPRLHRFHRANADIDVRLATSGVL 133 Query: 120 SEYFEDVKDPFDVIIWRSPLERSGYDCV--RFLDDVSV-PLASPHFLET-HPIRVPRDFV 175 +++ V D D+ I + GY V FL D V P+ SP L+ HP+R+P D Sbjct: 134 ADF---VSDGIDIAI---RYGKGGYTGVTAEFLADEEVFPVCSPELLQGEHPLRLPGDLR 187 Query: 176 EVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLALVDD 235 LIH + R W+ WL +AGV G ++ + +++AA +GV +G ALV Sbjct: 188 HHKLIHDAFR-IDWATWLQQAGVDGIDPKRGVRFDSATFAVEAAVHGEGVLLGRSALVSA 246 Query: 236 DLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWL 277 DLAAGRLVR F + Y+++Y A ++ F WL Sbjct: 247 DLAAGRLVRPFDLALKSAASYYLVYPDGALRQKKIRAFRDWL 288 >RSp0434 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 304 Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 140/286 (48%), Gaps = 11/286 (3%) Query: 2 FEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRG---VEPTEAALAFY 58 FEA+ R +S + AA EL +T +AV Q +++LE PLF R S G + TE A Sbjct: 13 FEASARHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRGSGGRVRLVATEVAQRAL 72 Query: 59 AEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIEVRVTTT 118 +++A DR++L E+L A S V+ + +P+ A +WL+PR+ +FQ P +VR+ T+ Sbjct: 73 PDIRAGFDRLSLGLERLKEASASGVLTVTVSPAFAAKWLLPRIDRFQAAWPDTDVRLDTS 132 Query: 119 MSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPIRV-PRDFVEV 177 + + V D+ + G + +D+ P+ SP L P D Sbjct: 133 L-RLVDFVVQGIDIGVRYGAGSWPGLVVEKLMDEEIYPVCSPELLRRKRRLRSPADLAGE 191 Query: 178 PLIHLSSRS-----AAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTLAL 232 LIH S A+W WL KAGV G +S LQAA GV + + Sbjct: 192 TLIHDLSVDRHEGFASWDAWLEKAGVTTVTTKRGMRINNSAAVLQAAIDGHGVALARSVM 251 Query: 233 VDDDLAAGRLVRLFPEIVLHGE-GYHMLYRSSADTNPALKTFITWL 277 DDL AGRLVRLFPE+ Y+++YR+ + P L F WL Sbjct: 252 ARDDLVAGRLVRLFPEVEFTSALAYYVVYRAECASLPRLVAFRDWL 297