BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0492.p         (138 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia s...   149   2e-36
XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fast...   106   1e-23
NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria m...    87   1e-17
NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria m...    87   1e-17
RC0423 [U] COG0848 Biopolymer transport protein Rco Rickettsia c...    84   1e-16

>RSc1965 [U] COG0848 Biopolymer transport protein Rso Ralstonia solanacearum
          Length = 137

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 104/135 (77%), Gaps = 1/135 (0%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQPDTLKP 61
           M  G+  D+DD+   EIN TPLVDVMLVLLIIFIIT+PV+N+AVKIDLPRAT +PD  KP
Sbjct: 1   MAFGTF-DNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKP 59

Query: 62  DSINLAIDADGKTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMAM 121
            S+N+ IDA G  +WN++PVD A L+A I +AA     PE+HLRA R+  YE+VAQVMA 
Sbjct: 60  QSVNVEIDAKGLVYWNNQPVDDATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAA 119

Query: 122 AQAGGLAKIGFVTDP 136
            Q GGLA+IGFVT+P
Sbjct: 120 IQRGGLARIGFVTEP 134


>XF0011 [U] COG0848 Biopolymer transport protein Xfa Xylella fastidiosa
           9a5c
          Length = 140

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 5/121 (4%)

Query: 17  EINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRAT---AQPDTLKPDSINLAIDADGK 73
           +IN TPLVDVMLVLLIIFIIT P+M++ +K++LP+A       +  + + I LA+  DG 
Sbjct: 14  DINVTPLVDVMLVLLIIFIITAPLMSHKIKVELPQANLVKKNNEEKRSNPITLAVKEDGS 73

Query: 74  TFWNDEPVDQAQLQARIGKAA-SAPQPPELHLRAARTTPYEKVAQVMAMAQAGGLAKIGF 132
            +WND  + + +L+ R   AA   PQPP L+LR  RTT   K+++++ +AQ  G+  IGF
Sbjct: 74  LYWNDAQISENELEQRFSVAAQQTPQPP-LNLRGDRTTKMSKISKIIKVAQGQGIMDIGF 132

Query: 133 V 133
           +
Sbjct: 133 I 133


>NMB1728 [U] COG0848 Biopolymer transport protein Nme Neisseria meningitidis
           MC58
          Length = 144

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 6/142 (4%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQP---DT 58
           M  GS++  DD    +IN TPLVDVMLVLLI+F+IT+PV+ +++ ++LP A+ Q    D 
Sbjct: 1   MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK 60

Query: 59  LKPDSINLAIDADGKTFWNDEP---VDQAQLQARIGKAASAPQPPELHLRAARTTPYEKV 115
              D + L IDA+G  +   +    V+  ++++R+  A    +   + + A +   Y+ V
Sbjct: 61  QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV 120

Query: 116 AQVMAMAQAGGLAKIGFVTDPR 137
            + +  A+  G+ KIGFVT+ +
Sbjct: 121 NKALEAARQAGITKIGFVTETK 142


>NMA1983 [U] COG0848 Biopolymer transport protein NmA Neisseria meningitidis
           Z2491
          Length = 144

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 6/142 (4%)

Query: 2   MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQP---DT 58
           M  GS++  DD    +IN TPLVDVMLVLLI+F+IT+PV+ +++ ++LP A+ Q    D 
Sbjct: 1   MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSIPLELPTASEQTNKQDK 60

Query: 59  LKPDSINLAIDADGKTFWNDEP---VDQAQLQARIGKAASAPQPPELHLRAARTTPYEKV 115
              D + L IDA+G  +   +    V+  ++++R+  A    +   + + A +   Y+ V
Sbjct: 61  QPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQNENVIVAIAADKAVEYDYV 120

Query: 116 AQVMAMAQAGGLAKIGFVTDPR 137
            + +  A+  G+ KIGFVT+ +
Sbjct: 121 NKALEAARQAGITKIGFVTETK 142


>RC0423 [U] COG0848 Biopolymer transport protein Rco Rickettsia conorii
          Length = 143

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 73/133 (54%)

Query: 5   GSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQPDTLKPDSI 64
           GS   S      EIN TPLVDVMLVLLIIF+IT P++ + V +DLP   + P + + + +
Sbjct: 7   GSNRKSKRAVVSEINVTPLVDVMLVLLIIFMITSPMLVSGVNVDLPETNSSPISGQDEPL 66

Query: 65  NLAIDADGKTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMAMAQA 124
            + I+  GK F  + P+++  L  ++       +   + +R  R   Y +V +++A   A
Sbjct: 67  VVTINNKGKIFLLEIPIERMHLTDKLANITKEKKDARIFVRGDRNVSYGQVVEIVAEIHA 126

Query: 125 GGLAKIGFVTDPR 137
            G +++  +++ +
Sbjct: 127 AGFSRVALISNIK 139