BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0490.p         (240 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0197 [M] COG0810 Periplasmic protein TonB, links inner and out...    75   1e-13
VCA0910 [M] COG0810 Periplasmic protein TonB, links inner and ou...    65   2e-10
XF2287 [M] COG0810 Periplasmic protein TonB, links inner and out...    61   2e-09

>PA0197 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Pae Pseudomonas aeruginosa
          Length = 270

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 156 YLTAPQPVYPAAARRRGDEGEVLLRVLINAQGGVEQIALERSSGIASLDQAAREAVQRAR 215
           YL  P P YPA A RRG EG VLLRV + A G   +I +++SSG  +LDQAA +AV+R  
Sbjct: 187 YLHNPAPEYPALAMRRGWEGTVLLRVHVLASGSPSEIQVQKSSGREALDQAAVKAVKRWS 246

Query: 216 FQPYVEQGRAQPAYVVVPIKFQLT 239
           F P     +A+  +V VPI F+L 
Sbjct: 247 FVPAKRGDKAEDGWVSVPIDFKLN 270


>VCA0910 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Vch Vibrio cholerae
          Length = 249

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 5/110 (4%)

Query: 129 SAPEAAAAPVTPAAPMIRPPVITSGVQYLTAPQPVYPAAARRRGDEGEVLLRVLINAQGG 188
           S P AA+  +T    ++  P + S        QP YP  AR+RG EG V+  + ++AQG 
Sbjct: 143 SQPTAASQGITSQPILVDKPALVSA-----QVQPRYPRIARKRGIEGTVMYEIWLDAQGN 197

Query: 189 VEQIALERSSGIASLDQAAREAVQRARFQPYVEQGRAQPAYVVVPIKFQL 238
             +  L  SSG  +LDQ+A EA+++ +F P++  G      + +PI+F+L
Sbjct: 198 QIKQQLLSSSGTEALDQSALEAIKQWKFSPHILDGVPVAHRIHIPIRFKL 247


>XF2287 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Xfa Xylella fastidiosa 9a5c
          Length = 231

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 160 PQPVYPAAARRRGDEGEVLLRVLINAQGGVEQIALERSSGIASLDQAAREAVQRARFQPY 219
           P P YPA A  RGD G V +R+L++A+G    + + +SSG   LD AA + V+  RF+P 
Sbjct: 150 PSPDYPAEAAARGDHGTVTVRILVDAEGAPSGVEMAKSSGSRDLDNAALQTVRNWRFKP- 208

Query: 220 VEQGRAQ--PAYVVVPIKFQLTQ 240
                 Q  P  + +P +F + Q
Sbjct: 209 ARNSNDQPVPGSIEIPFEFNVGQ 231