BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0482.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1941 Non COG                                                       139   2e-33
STM2723 [R] COG5518 Bacteriophage capsid portal protein Sty Salm...   128   3e-30

>RSc1941 Non COG
          Length = 361

 Score =  139 bits (349), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 1   VQILPVAEIAAKDEFFNIKNCTRDNVLAAHRVPPQLLGTMPNNTGGFGDVTKAAAVFGCN 60
           +Q+LPV+E+AAKDEF+NIKN TRD+ LAAHRVPPQL+G +PNNTGGFGDV KAA VF  N
Sbjct: 265 IQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAALVFARN 324

Query: 61  EIEPLQGQFLCLNEWIGSEVVRFRSYQLAG 90
           E++PLQ + L +N+WIG EVVRF  Y L  
Sbjct: 325 EVKPLQDRLLAVNDWIGEEVVRFAPYALGA 354


>STM2723 [R] COG5518 Bacteriophage capsid portal protein Sty Salmonella
           typhimurium LT2
          Length = 346

 Score =  128 bits (322), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 74/88 (84%)

Query: 1   VQILPVAEIAAKDEFFNIKNCTRDNVLAAHRVPPQLLGTMPNNTGGFGDVTKAAAVFGCN 60
           +QI+P++E+AAKDEF NIKN +RD+++AAHRVPPQ++G +PNNTGGFGDV KA+ VF  N
Sbjct: 256 IQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRN 315

Query: 61  EIEPLQGQFLCLNEWIGSEVVRFRSYQL 88
           E+ PLQ +   +NEWIG EV++F++Y L
Sbjct: 316 ELIPLQERMKEINEWIGHEVIKFKAYIL 343