BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0462.p (209 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3253 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 144 1e-34 AGc4121 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 139 5e-33 mll3493 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 130 2e-30 SMb20531 [K] COG1595 DNA-directed RNA polymerase specialized sig... 109 4e-24 BMEII0072_1 [K] COG1595 DNA-directed RNA polymerase specialized ... 102 4e-22 >CC3253 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Ccr Caulobacter vibrioides Length = 179 Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 15/180 (8%) Query: 31 EERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLAIHNAR 90 E RL+ L+L GLDGD AYR+ LA L RLRA+ +R+ DVED+VQETLLA+H R Sbjct: 5 ETRLKALMLRGLDGDTAAYREGLALLGVRLRAYFMRRMSGAPGDVEDLVQETLLAVHLKR 64 Query: 91 HTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARRDVG 150 T+ Q TAW HA+ARYKL+D R R R+ PL++ D L DD P D G Sbjct: 65 STWDSAQSFTAWAHAVARYKLIDHWRRRKIRQTL--PLEDHVDFL--ADDAP-----DPG 115 Query: 151 ALLE------ELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 LE LP +QR+ + VKL GLS+AE G+SE A KV +HR LKALA ++R Sbjct: 116 VALELDRALASLPQRQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALAERMR 175 >AGc4121 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 184 Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 111/177 (62%), Gaps = 3/177 (1%) Query: 29 PAEERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHL-QDDVEDVVQETLLAIH 87 P+EE L+ML+L LDGD +YR L L L A+ +R+ + DVED+VQETLL++H Sbjct: 7 PSEETLKMLMLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLH 66 Query: 88 NARHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARR 147 R TY +P TAW +IARYKL+D R R RR LDE + ++ D AR Sbjct: 67 AKRETYDRARPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVD--AVTARM 124 Query: 148 DVGALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIR 204 DV LL ELP++QR I VKLEG S+AE A+ +G +E A +VGIHR LK LA K+R Sbjct: 125 DVERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLR 181 >mll3493 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Mlo Mesorhizobium loti Length = 183 Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 3/170 (1%) Query: 31 EERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLAIHNAR 90 E L LL A + GD AY FL ++ +R F+R+++V D EDVVQETLLAIH R Sbjct: 6 EAELSRLLRAAIAGDEKAYADFLHRIAALVRGFVRRKIVQGGVDPEDVVQETLLAIHVKR 65 Query: 91 HTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARRDVG 150 HT+R D P+ W++AIAR+KL+D R R RR + +D+ + + E + RD+ Sbjct: 66 HTWRQDAPVLPWIYAIARFKLIDAFRRRGRRIEID--VDDIAETFAEPETETV-SERDIN 122 Query: 151 ALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALA 200 L+ LP QR + V +EG S+ ETA G+SE+AV+V +HRGL A+A Sbjct: 123 RALDGLPPAQRSVVSAVSVEGRSIGETAAKFGISETAVRVSLHRGLAAIA 172 >SMb20531 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Sme Sinorhizobium meliloti Length = 178 Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 37 LLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQDDVEDVVQETLLAIHNARHTYRPD 96 LL L G+ AY +FL + +R + R+R+ + D ED+VQETLLA+H RHT+R Sbjct: 12 LLRTALGGNEKAYSEFLQSAAALVRIWARRRVASVGLDPEDIVQETLLAVHLKRHTWRTG 71 Query: 97 QPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARRDVGALLEEL 156 P+ W+ AIAR+KL+D LR R L E L T + E A+ ++G LE L Sbjct: 72 GPVKPWLFAIARHKLVDALRRHGRHSRVQ--LSEIEGNLATEEAETARD-WEIGRALEVL 128 Query: 157 PDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKALALKIREK 206 QR + + +EG ++AE A+ M+E+AV+V +HRGL A+A + K Sbjct: 129 TPGQRSVVTAISVEGRTIAEAARSLDMNETAVRVALHRGLAAIARRFGRK 178 >BMEII0072_1 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Bme Brucella melitensis Length = 203 Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 8/170 (4%) Query: 31 EERLRMLLLAGLDGDAVAYRQFLAELSGRLRAFLRKRLVHLQ-DDVEDVVQETLLAIHNA 89 EERL+ L+L LDG++ AYR L ELS L+A+ +RL + + ED+VQETLLAIH Sbjct: 29 EERLKALMLLALDGNSAAYRTLLEELSRLLKAYFVRRLFGGRVSEAEDLVQETLLAIHTR 88 Query: 90 RHTYRPDQPLTAWVHAIARYKLMDFLRARSRREAFNDPLDEEHDLLTTCDDEPAQARRDV 149 R TY + WV+AIAR+KL+D LR + R + D LDE D+ + +AR DV Sbjct: 89 RMTYDREMTFLPWVNAIARHKLVDHLRRQGRHD--TDVLDE--DIAIPGEAANVEARMDV 144 Query: 150 GALLEELPDKQRLPIVHVKLEGLSVAETAQLTGMSESAVKVGIHRGLKAL 199 +L + ++ I VK+EG S+ + A+ MS+SA G R + AL Sbjct: 145 DRVLGGVSERTGGLIRQVKIEGQSIDDAARADDMSQSA---GGWRSIGAL 191