BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0445.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas ae...   150   6e-37
RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia sol...   148   3e-36
mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium...   144   7e-35
SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobiu...   138   4e-33
BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella mel...   131   4e-31

>PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas aeruginosa
          Length = 126

 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 88/117 (75%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGK 60
           MG+L+THVLD   G PG G+K+ LY V G    L+   +TN DGRCD P+L+GE  +PG 
Sbjct: 10  MGRLTTHVLDSAHGCPGHGIKIELYRVEGQQLELIATTLTNHDGRCDQPVLQGEDFRPGV 69

Query: 61  YELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 117
           Y+LVF AGDY+  +GV LPEP F+D+VV+ FG+A A  +YHVPL++SP++YSTYRGS
Sbjct: 70  YQLVFNAGDYYRARGVQLPEPAFLDQVVLRFGIASADDHYHVPLLISPYSYSTYRGS 126


>RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia solanacearum
          Length = 117

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 85/117 (72%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGK 60
           MG+L+THVLD   G PG  + + L+ +    +  +K   TN DGRC+APLLEGEALQ G 
Sbjct: 1   MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGI 60

Query: 61  YELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 117
           YEL FA GDY+   GVSLP+P F+D V + FGVADA  +YHVPL+VSPW+YSTYRGS
Sbjct: 61  YELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAGAHYHVPLLVSPWSYSTYRGS 117


>mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium loti
          Length = 124

 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGKY 61
           G+L+THVLD   GKP AG+ +ALY + G  +T LK   TN+DGRCDA LL G   + G+Y
Sbjct: 10  GRLTTHVLDTATGKPAAGLSIALYRLDGSARTHLKTVATNADGRCDAALLAGAEFRAGEY 69

Query: 62  ELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 117
           ELVFAAGDY   QG  LPEP F+D V I FG+A+A  +YHVPL++SP+ YSTYRGS
Sbjct: 70  ELVFAAGDYLRGQGTKLPEPAFLDSVPIRFGMAEAV-HYHVPLLISPYGYSTYRGS 124


>SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobium meliloti
          Length = 129

 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVTGGGKTLLKHAVTNSDGRCDAPLLEGEALQPGKY 61
           G+L+THVLD   G+P  G+K+ LY + G  + L++   TNSDGR D PL+EG     G Y
Sbjct: 14  GRLTTHVLDTALGRPAHGLKIDLYRLEGDARHLIRTVHTNSDGRVDGPLMEGAGFATGTY 73

Query: 62  ELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 117
           ELVF AGDYF   GV LP+P F++ V + FG+ADA  +YHVPL++SP+ YSTYRGS
Sbjct: 74  ELVFHAGDYFRSAGVKLPDPAFLELVPLRFGIADADSHYHVPLLLSPYGYSTYRGS 129


>BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella melitensis
          Length = 123

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVTGGGK-TLLKHAVTNSDGRCDAPLLEGEALQPG 59
           MGKLSTHVLD   G P A +++ LY +   G   LLK  VTN DGR DAPLL G+ ++ G
Sbjct: 6   MGKLSTHVLDTAHGTPAAAMRVELYRIAASGTPELLKRVVTNLDGRTDAPLLSGDEMRTG 65

Query: 60  KYELVFAAGDYFAEQGVSLPEPRFVDEVVIAFGVADASQNYHVPLVVSPWAYSTYRGS 117
            YEL F   +YF  +G  L    F+D + I FG+AD   NYHVPL+VSPW+YSTYRGS
Sbjct: 66  IYELQFHVAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHVPLLVSPWSYSTYRGS 123