BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0415.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3191 [T] COG0642 Signal transduction histidine kinase Pae Pseu...   137   1e-32
mlr2741 [T] COG0642 Signal transduction histidine kinase Mlo Mes...   114   1e-25
BMEII0792 [T] COG0642 Signal transduction histidine kinase Bme B...   113   3e-25
CC1181 [T] COG0642 Signal transduction histidine kinase Ccr Caul...   107   2e-23
SMc01595 [T] COG0642 Signal transduction histidine kinase Sme Si...   100   3e-21

>PA3191 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 473

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 10/182 (5%)

Query: 1   MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 60
           ++D+ ++  F  DLDEL+++VKGALQ VKD+DIHEN   V L+ L+L+ I +  LA   +
Sbjct: 296 LEDERLQEKFGRDLDELELLVKGALQCVKDTDIHENVESVDLN-LLLQHIAEPYLADGRV 354

Query: 61  AFTPSGINVMA-KPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPG 119
                       KPLALKR IGNL DNAL YG++  +S+      G + V + + D GPG
Sbjct: 355 EVVGRAAEPYPGKPLALKRCIGNLLDNALKYGERARLSLED----GPEAVVLHVDDDGPG 410

Query: 120 VPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATII 179
           VPE  +  +F+P  RL    +    G GLGLGI+RNI   HGGE+ L+N  EGGL  ++ 
Sbjct: 411 VPEQRLEQIFEPRFRL----SPRGQGYGLGLGIARNIAHTHGGEVSLQNRREGGLRVSLR 466

Query: 180 LP 181
           LP
Sbjct: 467 LP 468


>mlr2741 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium
           loti
          Length = 468

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 4/116 (3%)

Query: 66  GINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDAM 125
           G+  MA+P+AL+R + NL  NA+ YG+K  +S+  S G     + + IRD GPG+P+  +
Sbjct: 354 GLICMARPVALRRCVTNLVQNAVTYGKKAHLSLHRSDGT----ITLTIRDEGPGIPQAQI 409

Query: 126 GTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILP 181
             +F  +VRLE  R + +GG+GLGL I+RNI +A GGE+ L NHP+GGL+  + LP
Sbjct: 410 DAVFGSFVRLEQSRNRQTGGLGLGLTIARNIARAAGGEIRLSNHPDGGLLTELRLP 465


>BMEII0792 [T] COG0642 Signal transduction histidine kinase Bme Brucella
           melitensis
          Length = 474

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 5/182 (2%)

Query: 1   MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMI-RDARLAGHE 59
           +DDDA+R     DL++++ + +  +        HE    + L +L+L +  +  +++  E
Sbjct: 290 LDDDALRQSLSRDLNDIEAISRSVIDFATSELAHEKAERLDLWSLLLSVADKYPQVSLDE 349

Query: 60  IAFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPG 119
                     + +P++++R I NL DNAL YG KV +S+       GD + + I+D+GPG
Sbjct: 350 KGSDYRDAICLCQPISIQRCITNLIDNALAYGGKVRLSLHRD----GDDLLLRIKDNGPG 405

Query: 120 VPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATII 179
           +  + +  +F+P+ R +  R + SGG GLGL I+RNI + +GGE+ LRN P GGLIA + 
Sbjct: 406 ISPERIEEMFKPFSRADKSRNRESGGFGLGLTIARNIARKNGGEISLRNDPAGGLIAELR 465

Query: 180 LP 181
           LP
Sbjct: 466 LP 467


>CC1181 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter
           vibrioides
          Length = 475

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 5/178 (2%)

Query: 6   MRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPS 65
           +R     D+D+++ M+   L  V+D++    RT++ L +L+  ++ +A   G +     S
Sbjct: 302 IRPKLAADIDQMEAMISATLGFVRDTNRPAERTKLELSSLLESVMDEAAETGGDATVERS 361

Query: 66  GINVM-AKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDA 124
              V+   P+ALKR + NL +NAL YG +    +    G    +  IEI D GPGVP   
Sbjct: 362 EKTVIEGDPVALKRLVSNLVENALKYGGRARGRVFSEDG----MAIIEIDDDGPGVPPAE 417

Query: 125 MGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILPA 182
           +  +F+P+ R E  R + +GG+GLGL + R++ +AHGG+++L N   GGL AT+ LPA
Sbjct: 418 LERVFEPFYRGEPSRNRETGGIGLGLAVVRSLARAHGGDVVLANRLGGGLRATVKLPA 475


>SMc01595 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium
           meliloti
          Length = 460

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 10  FHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEIAFTPSGIN- 68
            + D++++  M++G L   +  D  E+   ++L  L+ R+  +A L G  +     G N 
Sbjct: 292 LNQDVEDMQNMLEGYLAFAR-GDAEEDVGRLKLSDLMARLAAEAELYGKTLTTAIQGENE 350

Query: 69  VMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGVPEDAMGTL 128
           +  +P A  R + NL  NA  Y   V I  R SA      + I + D GPG+PE +   +
Sbjct: 351 IHVRPNAFTRLVSNLASNAYRYANTVHIEARQSA----KWLTITVDDDGPGIPERSREDV 406

Query: 129 FQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIILPA 182
           F+P+ RL+  R  +S G GLGL ++R+I ++HGG + L + P GGL AT+ +P 
Sbjct: 407 FKPFFRLDEARNLDSSGTGLGLAVARDIARSHGGNVTLADSPLGGLRATVRVPT 460