BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0403.p (340 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3759 [M] COG2222 Predicted phosphosugar isomerases Pae Pseudom... 376 e-104 CC0444 Non COG 290 4e-78 CC0535 Non COG 281 2e-75 XF1464 [M] COG2222 Predicted phosphosugar isomerases Xfa Xylella... 280 4e-75 DRA0154 [M] COG2222 Predicted phosphosugar isomerases Dra Deinoc... 226 5e-59 >PA3759 [M] COG2222 Predicted phosphosugar isomerases Pae Pseudomonas aeruginosa Length = 340 Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/340 (60%), Positives = 248/340 (72%) Query: 1 LTSLMLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYL 60 +TSLML+EA SAA + QL ALG +LR P +TVARGSSDHAA+Y AYL Sbjct: 1 MTSLMLEEALSAATVASRQLAVLDACLPALGQRLREVDPNLALTVARGSSDHAASYFAYL 60 Query: 61 IMARLGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVAL 120 M G VASLPMS+VTLNR+PL+V A SQSGQSPD+V+ +R +GA +AL Sbjct: 61 AMQHAGLPVASLPMSVVTLNRSPLRVAGQAVFAFSQSGQSPDLVDSLRILRERGALGIAL 120 Query: 121 VNQAESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLP 180 VN +SPL AA+++ +PL AG E SVAATKSFIA+L A A L AHWQ D ALL A L Sbjct: 121 VNAEDSPLEAASEFVVPLCAGAERSVAATKSFIATLSASARLLAHWQRDNALLAAGQGLA 180 Query: 181 QALRAACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIK 240 L A DWS A+E L RLM++GRG G+ +A EAALK+KET AIQAEAFS AE++ Sbjct: 181 AGLEQAARLDWSPAIEVLRDCQRLMVIGRGAGYAIAQEAALKFKETSAIQAEAFSSAEVR 240 Query: 241 HGPMALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAAT 300 HGPMAL+E+ YPLL+FA RGP Q G+LALA +MR RGA+VLLAAP+D+ ERDL L AA Sbjct: 241 HGPMALVEERYPLLVFAPRGPEQEGLLALAEDMRQRGAQVLLAAPDDIAERDLPLQRAAH 300 Query: 301 PDLDPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 340 P LDPI+AIQ+FYVMAA L+ ARGMD D+PRHL+KVT+T+ Sbjct: 301 PALDPILAIQSFYVMAAGLAEARGMDPDQPRHLSKVTRTH 340 >CC0444 Non COG Length = 363 Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 178/341 (52%), Positives = 226/341 (66%), Gaps = 13/341 (3%) Query: 5 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 64 M +EA AA AVQLT + + AL +LRA PP +VT ARGSSDHAA + YLI + Sbjct: 29 MFREAGEAARVAAVQLTANAPKIQALAQRLRANPPRVVVTCARGSSDHAATFARYLIETK 88 Query: 65 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 124 G + +S S+ ++ A + AL +AISQSG+SPD++ ++ A GA VALVN Sbjct: 89 AGVLTSSAGPSVSSVYDASPNLEGALYLAISQSGKSPDLLAAVKAAKAAGAHAVALVNVV 148 Query: 125 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 184 +SPLAA A +PLHAG E SVAATKS+IA+LVA L A W +DA L AL LP AL Sbjct: 149 DSPLAALADEVIPLHAGPELSVAATKSYIAALVAVTQLIAAWTEDAELTAALQDLPTALA 208 Query: 185 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 244 AA DWS AVE L A+ L ++GRG+GF +ALEAALK+KETC + AEAFS AE+ HGPM Sbjct: 209 AAWTLDWSLAVERLKTASNLYVLGRGVGFGVALEAALKFKETCGLHAEAFSAAEVLHGPM 268 Query: 245 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLA-----APEDVIERDLTLP-VA 298 AL++DG+P L+FA S+A + +AA +RARGA VL+A AP+ LP +A Sbjct: 269 ALVKDGFPALVFAQNDESRASVDEMAAGLRARGASVLIAGGGGDAPD-------ALPTLA 321 Query: 299 ATPDLDPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 339 + P L+PI+ IQ+FY MA LS ARG D D P HLNKVT+T Sbjct: 322 SHPVLEPILMIQSFYRMANALSVARGYDPDSPPHLNKVTET 362 >CC0535 Non COG Length = 358 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 166/335 (49%), Positives = 217/335 (64%), Gaps = 1/335 (0%) Query: 5 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 64 M EA A V L + +R AAL +LRA PP +VT ARGSSDHAA + YLI + Sbjct: 24 MFLEAGEGAAVVRTLLAANAERVAALAERLRAHPPRVVVTCARGSSDHAATFARYLIETK 83 Query: 65 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 124 G + +S +S+ ++ A + AL +A+SQSG+SPD++ ++ A GA VA VN Sbjct: 84 AGVLTSSAGLSVSSVYDASPNLEGALCLAVSQSGKSPDLLASVKAAKAAGAHAVAFVNVE 143 Query: 125 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 184 +SPLAA A +PLHAG E SVAATKS+IA+L A L A W D AL AL LP L Sbjct: 144 DSPLAALADVVIPLHAGPELSVAATKSYIAALAAITQLIAAWTQDEALTAALEGLPLQLE 203 Query: 185 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 244 AA DWS+AVE L A L ++GRG+GF +ALEAALK+KETC + AEAFS AE+ HGPM Sbjct: 204 AAWNLDWSSAVEGLRHAINLYVLGRGVGFGVALEAALKFKETCGLHAEAFSAAEVLHGPM 263 Query: 245 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 304 AL+++G+P L+FA S+ ++ +A +R RGA VL+AAP D L P+ + P L+ Sbjct: 264 ALVKEGFPALVFAQNDESRESVVEMAQGLRQRGASVLMAAPGDDAPGGLPTPL-SHPVLE 322 Query: 305 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 339 PI+ +Q+FY MA LS ARG + D P HLNKVT+T Sbjct: 323 PILMVQSFYRMANALSVARGYNPDSPPHLNKVTET 357 >XF1464 [M] COG2222 Predicted phosphosugar isomerases Xfa Xylella fastidiosa 9a5c Length = 332 Score = 280 bits (715), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 161/335 (48%), Positives = 213/335 (63%), Gaps = 4/335 (1%) Query: 5 MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 64 M +EA AA +A Q R+ A L LRA PP +VT ARGSSDH A Y YL+ + Sbjct: 1 MFREAAQAAAVIATQFERNAATIATLVRALRADPPPFVVTCARGSSDHVATYAKYLLETQ 60 Query: 65 LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 124 LG + AS +S+ ++ A LQ+R AL + ISQSG+SPD++ + A GA VALVN Sbjct: 61 LGLVTASASLSVGSIYAASLQLRGALYLVISQSGKSPDLLRNVEAAKAAGARVVALVNVE 120 Query: 125 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 184 +SPLA+ A LPL AG E SVAATKS++ASL A L A W+ ++ LL AL + ALR Sbjct: 121 DSPLASLADTVLPLCAGPEQSVAATKSYLASLSAVLQLVAVWKAESGLLAALDGMSDALR 180 Query: 185 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 244 A ECDW+ ++ LV A L ++GRG G A EAALK+KETC + AEA+S AE+KHGPM Sbjct: 181 TAWECDWTGLIDGLVNARNLFVLGRGFGLATAQEAALKFKETCGLHAEAYSAAEVKHGPM 240 Query: 245 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 304 AL+ G+P+L+F+ ++A + ALA E R RG+ V L AP+ DL + VAA P Sbjct: 241 ALVGSGFPVLVFSQSDGTEAAVRALAHEFRGRGSLVWLVAPDG----DLPVGVAAHPVCA 296 Query: 305 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 339 P+++IQ+FY L+ RG + D P HL KVT+T Sbjct: 297 PLLSIQSFYRAINTLALCRGYNPDLPPHLKKVTET 331 >DRA0154 [M] COG2222 Predicted phosphosugar isomerases Dra Deinococcus radiodurans Length = 349 Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 153/338 (45%), Positives = 194/338 (57%), Gaps = 4/338 (1%) Query: 4 LMLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMA 63 LML+E R A V L +QD A L +R PA VT+ARGSSDHA Y + Sbjct: 13 LMLREMREAPAVVRRLLNENQDAVARLANAIRERQPAYAVTIARGSSDHACTVLKYALET 72 Query: 64 RLGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQ 123 +L VASL S+ TL A L + AL IA+SQSG SPDVVE +R GA TVALVN Sbjct: 73 QLSLPVASLGPSVHTLYGARLDLAGALVIAVSQSGASPDVVENVRMAREGGALTVALVNV 132 Query: 124 AESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQAL 183 +SPLA AA+++LPL G E +VAATKS++ASL A + A D AL AL LP+ L Sbjct: 133 EDSPLAEAAEFTLPLRCGPEKAVAATKSYLASLCAFLPVLAELTGDEALKRALDALPEQL 192 Query: 184 RAACECDWSAAVEA--LVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKH 241 + +A A A+ L+I+ RG + +A EAALK KETC I AEA+S AE H Sbjct: 193 AHTLTLEDAAHELAGRYRFADNLLILARGHHYGVAQEAALKLKETCGIHAEAYSAAEFSH 252 Query: 242 GPMALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATP 301 GP L+ +G PLL FA+ + ++RA GA + L P V DL P+ P Sbjct: 253 GPKRLLAEGLPLLGFASADAAWEATRQAYDDLRAAGADLRLLGP--VAGADLPTPLGGHP 310 Query: 302 DLDPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKT 339 DP+ + AFY+ A L+ RG+D DRP L+KVTKT Sbjct: 311 LTDPVTSTLAFYLFVAHLALERGLDPDRPPLLSKVTKT 348