BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0287.p (198 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4923 [R] COG1611 Predicted Rossmann fold nucleotide-binding pr... 228 8e-60 RSc2087 [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 220 2e-57 Cgl2328 [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 192 5e-49 BH3084 [R] COG1611 Predicted Rossmann fold nucleotide-binding pr... 189 4e-48 BS_yvdD [R] COG1611 Predicted Rossmann fold nucleotide-binding p... 184 8e-47 >PA4923 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Pae Pseudomonas aeruginosa Length = 195 Score = 228 bits (580), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 99/190 (52%), Positives = 135/190 (71%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 ++S+CV+CG+SPGASP Y EAA L + + + + LVYGGG VGLMG +A + GGE Sbjct: 3 LRSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEV 62 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 G+IP++L + E+GH GLTRL +V MH RKA MAEL+D F+A+PGG+GTLEELFEV TW Sbjct: 63 IGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFEVWTW 122 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 QLG+H KP+ L V+GFY+ L+ F+DHLV +RFV ++ G++ A P L++ + Sbjct: 123 GQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWT 182 Query: 181 PTYKTKWADR 190 P+ KW DR Sbjct: 183 PSVAPKWVDR 192 >RSc2087 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Rso Ralstonia solanacearum Length = 194 Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 103/191 (53%), Positives = 130/191 (68%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MKSICVYCGSSPG P Y A L EMV + LVYGGGN+GLMGI+A V++ G Sbjct: 1 MKSICVYCGSSPGERPEYKAGAIALGNEMVGRGLTLVYGGGNIGLMGIVADAVLRGGNPV 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 G+IPK+L+ KE+GH +T LHIV MH+RK MMA+ +D F+AMPGG+GT EELFE TW Sbjct: 61 IGIIPKSLVRKEVGHKDVTELHIVDSMHQRKQMMADRADAFIAMPGGIGTYEELFETFTW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 QLG+H KPI L NV GFY+ L+AF+DH V + F+ + L+ ADP +LI+R + Sbjct: 121 LQLGYHGKPIGLLNVAGFYDKLLAFIDHAVEEGFLKRHHADLLHVSADPAELIDRLERAP 180 Query: 181 PTYKTKWADRE 191 KWA+R Sbjct: 181 RHPVDKWAERR 191 >Cgl2328 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Cgl Corynebacterium glutamicum Length = 195 Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 94/187 (50%), Positives = 126/187 (67%), Gaps = 1/187 (0%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 ++ + V+ GS+ G+S Y +AA+ LA+ V I LVYGGG VGLMGI+A ++ GGEA Sbjct: 10 LQRVTVFTGSALGSSSLYTQAAQTLAKTAVDRGIDLVYGGGKVGLMGIVADAFLESGGEA 69 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 GVI ++L+ ELGH+ LT L IV DMH RK MAEL DGF+AMPGG GTLEELFEV TW Sbjct: 70 FGVITESLMKGELGHEKLTELEIVPDMHIRKRRMAELGDGFIAMPGGAGTLEELFEVWTW 129 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 QLG H KP+ LY+VDGF+ L+ ++ + + F+ D ++ E+DP L++ QT+ Sbjct: 130 QQLGIHQKPVALYDVDGFWQPLLEMLEQMTQRGFIKRDFFECLIVESDPHALLKAMQTWT 189 Query: 181 PTYKTKW 187 P KW Sbjct: 190 PP-APKW 195 >BH3084 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Bha Bacillus halodurans Length = 187 Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 125/178 (70%) Query: 4 ICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEATGV 63 I V+CGSS GAS Y E AR+L +E+ + I LVYGG +VG+MG +A V++ GGE GV Sbjct: 3 IAVFCGSSNGASDVYKEGARQLGKELARRGITLVYGGASVGIMGAVADSVLEAGGEVIGV 62 Query: 64 IPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTWAQL 123 +P+ L + E+ H LT+L +V+ MHERKA MAEL+DGF+A+PGG GTLEE FE+ TWAQ+ Sbjct: 63 MPRFLEEPEISHPHLTKLIVVETMHERKAKMAELADGFLALPGGPGTLEEFFEIFTWAQI 122 Query: 124 GFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFKP 181 G H KP L N++ +++ L+ + H+ +++F+ + + DP+ L+++F T++P Sbjct: 123 GLHQKPCGLLNINHYFDPLVTLLHHMSNEQFLHEKYRSMALVHTDPILLLDQFSTYEP 180 >BS_yvdD [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Bsu Bacillus subtilis Length = 191 Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%) Query: 1 MKSICVYCGSSPGASPAYAEAARKLAQEMVKNNIALVYGGGNVGLMGIIASEVMKLGGEA 60 MK+ICV+ GS+PG + AY A +L M + I LVYGG VGLMG IA +M+ GG A Sbjct: 1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTA 60 Query: 61 TGVIPKALLDKELGHDGLTRLHIVKDMHERKAMMAELSDGFVAMPGGMGTLEELFEVLTW 120 GV+P L E+ H LT L V MHERKA M+EL+DGF++MPGG GT EELFEVL W Sbjct: 61 IGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCW 120 Query: 121 AQLGFHYKPICLYNVDGFYNNLIAFVDHLVSQRFVSSDQSGLMMHEADPVKLIERFQTFK 180 AQ+G H KPI LYNV+G++ ++ V + + + F + L+ + P +LIE+ Q + Sbjct: 121 AQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYS 180 Query: 181 -PTYKTKWAD 189 P + KW + Sbjct: 181 YPILEKKWTE 190