BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0283.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1977 [R] COG1286 Uncharacterized membrane protein, required f...   120   1e-27
NMB0691 [R] COG1286 Uncharacterized membrane protein, required f...    83   3e-16
PM0702 [R] COG1286 Uncharacterized membrane protein, required fo...    82   5e-16
HI1206 [R] COG1286 Uncharacterized membrane protein, required fo...    81   1e-15
PA3109 [R] COG1286 Uncharacterized membrane protein, required fo...    81   1e-15

>RSc1977 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Rso Ralstonia solanacearum
          Length = 165

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 2   TIFDYLVLLILACSVIIGTLRGLVREVLSLAGWIVALVVANTYGEALSTMLPDVVPG-EL 60
           T FDY VL I+  S ++G  RGL+RE+L+LAGW+ A  VA T+    +  +P+ +PG  +
Sbjct: 4   TFFDYGVLFIVVASALVGLFRGLIREILALAGWLFAAWVAYTFSGVAAGWMPESLPGGPV 63

Query: 61  TRLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGVLLVVAVALL 120
            R ++ F+ LF+ T +  +LV   L  ++++ GL   DR LG +FG+ARG ++++ +  +
Sbjct: 64  ARTVLGFVLLFVVTVIGTSLVGALLSAVLESAGLKPADRGLGMVFGLARGGVIILVLMTV 123

Query: 121 CGTTAIPQQNFWKQARFSPWVEQAAEAVLPYLPGKLAEHVSF 162
            G T++P+Q FW+ A   P+ E+AA A  P LP  +A+++ +
Sbjct: 124 AGFTSVPEQPFWRDALTRPYAEEAARAAKPLLPPDVAKYIHY 165


>NMB0691 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Nme Neisseria meningitidis MC58
          Length = 165

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%)

Query: 3   IFDYLVLLILACSVIIGTLRGLVREVLSLAGWIVALVVANTYGEALSTMLPDVVPGELTR 62
           I D LV  ++A  +++  +RG++ E  S+A W+V+   A  +  + + +        L  
Sbjct: 6   IADLLVSAVIAACIVLSAMRGVIAEAGSMAAWVVSFFFAKLFAASFADLAFASFQPRLFA 65

Query: 63  LIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGVLLVVAVALLCG 122
           L ++FI+LF+   L+  ++   L   V A GLGF +R LG +FG  +GVL+V  + +L  
Sbjct: 66  LALSFISLFVIACLIQKMLRSLLTSAVSAVGLGFANRILGGVFGALKGVLIVTLLVMLAS 125

Query: 123 TTAIPQQNFWKQARFSPWVEQAAEAVLPYLPG 154
            T +P    W+Q+   P+    +EAVL +  G
Sbjct: 126 KTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGG 157


>PM0702 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pmu Pasteurella multocida
          Length = 163

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 9/162 (5%)

Query: 5   DYLVLLILACSVIIGTLRGLVREVLSLAGWIVALVVANTYGEALSTMLPDVVPGELTRLI 64
           DY+++ I+A S+II  LRG +REV+S+A W+VA  VAN +   L+  L  +    L R  
Sbjct: 3   DYIIIAIIAFSIIISLLRGFIREVMSVASWVVAFFVANHFYPYLANYLTQIESLYL-RNG 61

Query: 65  VAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGVLLVVAVALLCGT- 123
            A   LF+ T ++  +V   LGELV  TGL   DR LG+ FG+ RGVL+V A+     T 
Sbjct: 62  TAIAILFVATLIVGGIVNHILGELVDKTGLTGTDRVLGACFGLIRGVLIVAALLFFMDTF 121

Query: 124 TAIPQQNFWKQARFSP-------WVEQAAEAVLPYLPGKLAE 158
           T   Q  +WK+++  P       W  Q  +A   ++   L +
Sbjct: 122 TNFSQTVWWKESKLIPHFGFIVEWFFQQLQATSSFINSTLNK 163


>HI1206 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Hin Haemophilus influenzae
          Length = 163

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 9/154 (5%)

Query: 13  ACSVIIGTLRGLVREVLSLAGWIVALVVANTYGEALSTMLPDVVPGELTRLIVAFIALFI 72
           A S+++  LRG VREVLSL  WIVA +VA+ +   L+  L   +     R   A   LF+
Sbjct: 11  AFSILVSLLRGFVREVLSLGSWIVAFIVASQFYPYLAAYLTQ-IESMYIRNGTAIAILFV 69

Query: 73  GTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGVLLVVAVALLCGT-TAIPQQNF 131
            T ++ A+V   + +LV  TGL   DR LG+ FG+ RG L+V A+     T T   Q ++
Sbjct: 70  LTLIVGAIVNYVISQLVDKTGLSGTDRVLGAAFGLVRGALIVAALLFFMDTFTNFEQTDW 129

Query: 132 WKQARFSP-------WVEQAAEAVLPYLPGKLAE 158
           WK+++  P       W  Q  +A   +L   L +
Sbjct: 130 WKESQLIPHFGFIIEWFFQQLQASSSFLTPTLNQ 163


>PA3109 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pae Pseudomonas aeruginosa
          Length = 180

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 79/138 (57%)

Query: 2   TIFDYLVLLILACSVIIGTLRGLVREVLSLAGWIVALVVANTYGEALSTMLPDVVPGELT 61
           T  D+ ++ I+  S +I   RG V+E LSL  WIVA  VA  +G AL+  L + +     
Sbjct: 4   TWVDWTMVAIIVVSSLISLSRGFVKEALSLLTWIVAGAVAWMFGGALAQHLGEYIQTPSA 63

Query: 62  RLIVAFIALFIGTRLLMALVAKTLGELVKATGLGFLDRTLGSIFGVARGVLLVVAVALLC 121
           R+I A   LFI T LL ALV   +GEL++ TGL   DR LG +FG ARGVLLVV +  L 
Sbjct: 64  RIIAACALLFIATLLLGALVNYLIGELIRVTGLSGTDRFLGMVFGGARGVLLVVLLVGLL 123

Query: 122 GTTAIPQQNFWKQARFSP 139
               + Q  +W+Q+   P
Sbjct: 124 SLAPVQQDPWWQQSVLMP 141