BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0262.p         (106 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia sol...   127   8e-30
PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas ae...   113   1e-25
CC3163 Non COG                                                        103   7e-23

>RSc1560 [S] COG4323 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 105

 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 71/104 (68%)

Query: 3   ATLPERHYASFSEFYPTYLSEHAHRVNRQLHFLGSTLALLSLLLLLITHQWWWLAVALFC 62
           AT     + SF+EFYP YL EH +R  R+LHF GSTLAL+ L+ L+ T   WWL  A   
Sbjct: 2   ATTDAHRFGSFAEFYPYYLGEHRNRTCRRLHFAGSTLALVCLIQLVFTGSLWWLLAAAVS 61

Query: 63  GYGFAWVGHFMVEKNQPATFRHPFYSFMGDWVMYWQMLTGQVSF 106
           GY FAWVGHF  EKN+PATFRHP YS MGDWVMY  +  G++ F
Sbjct: 62  GYAFAWVGHFAFEKNRPATFRHPIYSLMGDWVMYRDIWIGKIPF 105


>PA3216 [S] COG4323 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 105

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 1   MAATLPERHYASFSEFYPTYLSEHAHRVNRQLHFLGSTLALLSLLLLLITHQWWWLAVAL 60
           M++   ER + SF+EFYP YL EH++ V R+LH++GS L L  L   + + QW WL    
Sbjct: 1   MSSPDDER-FHSFAEFYPYYLQEHSNAVCRRLHYVGSLLVLAVLFHAVASQQWLWLLALP 59

Query: 61  FCGYGFAWVGHFMVEKNQPATFRHPFYSFMGDWVMYWQMLTGQVSF 106
             GYGFAWVGHF+ EKN+PATF++P +SFMGDWVM     TG++ F
Sbjct: 60  LVGYGFAWVGHFVFEKNRPATFKYPLWSFMGDWVMLKDAFTGRIRF 105


>CC3163 Non COG
          Length = 208

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 9   HYASFSEFYPTYLSEHAHRVNRQLHFLGSTLALLSLLLLLITHQWWWLAVALFCGYGFAW 68
            Y SF+ FYP Y++EHA+ V+R+LH +G++L ++ L+L +    W +   A   GYGFAW
Sbjct: 112 RYKSFAAFYPFYMTEHANPVSRRLHVVGTSLVIVCLVLGVF-RDWRFFIAAPVIGYGFAW 170

Query: 69  VGHFMVEKNQPATFRHPFYSFMGDWVMYWQMLTGQVSF 106
           +GHF+ EKN+PATF++P YS MGD+ ++++ +TG+  F
Sbjct: 171 IGHFVFEKNRPATFKYPVYSLMGDFRLWFETVTGRRKF 208