BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0248.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0002 [J] COG0594 RNase P protein component Rso Ralstonia sola...    65   4e-11

>RSc0002 [J] COG0594 RNase P protein component Rso Ralstonia solanacearum
          Length = 131

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 1   LYARRNSLPQARLGVVAAKRLAPRAVTRNTIKRATRELF--RQAELPAVDCIVRLSRPVN 58
           LY R N  PQARLG+V  K+ A RAV RN IKR  RELF  RQA L   D ++RL     
Sbjct: 23  LYVRANGHPQARLGIVIGKKFARRAVERNLIKRQCRELFRLRQAALGGRDVLIRLQTKF- 81

Query: 59  TRKDPARSASVKAMLRAELMQLF 81
            R+D    A+ K + R EL  LF
Sbjct: 82  PREDVPTVAAFKRLCREELSYLF 104