BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0235.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0292 [TK] COG2197 Response regulator containing a CheY-like r... 200 2e-51 PA0601 [TK] COG2197 Response regulator containing a CheY-like re... 155 8e-38 STM1947 [TK] COG2197 Response regulator containing a CheY-like r... 150 2e-36 uvrY [TK] COG2197 Response regulator containing a CheY-like rece... 149 4e-36 ZuvrY [TK] COG2197 Response regulator containing a CheY-like rec... 149 5e-36 >RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 210 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/211 (47%), Positives = 144/211 (68%), Gaps = 3/211 (1%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 IR+L+ DDH IVR GL+Q L++ DIEVA E ASG EV+ R D+V+LDI++P ++ Sbjct: 2 IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRN 61 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 G+D L+ ++Q P LPVL+LST+PE QYA + GA+GYL K + P++L++AIR + G Sbjct: 62 GIDTLKLVRQRHPDLPVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQG 121 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 YVS +AE L GL + P H++LS RE+Q+F +A G+SV IA++L LS Sbjct: 122 RRYVSPTVAELLIGGLEKPTDQP---LHQTLSKREFQIFCKLARGQSVSIIAEELFLSVK 178 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQLL 218 TVSTYR+RILEK G ++ + YA+++ L+ Sbjct: 179 TVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209 >PA0601 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 210 Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 131/211 (62%), Gaps = 3/211 (1%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 IR+L+ +DH IVREG+KQ++ D++V E +G ++L + R ++VLLDI++P + Sbjct: 3 IRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLRGTPCEVVLLDISMPGVN 62 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 GL+ + +I+ +L+LS + E Q AAR K+GAAGY K +DP L+ AIR+ AGG Sbjct: 63 GLEAIPRIRALNEPPAILVLSMHDEAQMAARALKIGAAGYATKDSDPALLLTAIRRVAGG 122 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 G Y+ +A+ + + + R H LS RE+ VF+ + G +V EIA QL +S Sbjct: 123 GRYIDPDLADRM---VFEVGLTDSRPPHALLSEREFSVFERLVQGANVNEIAQQLAVSNK 179 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQLL 218 T+ST+++R+++K A + + YA+ H+LL Sbjct: 180 TISTHKARLMQKLNAHSVADLVRYAMEHRLL 210 >STM1947 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 218 Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 2/210 (0%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 I +LL DDH +VR G+++IL D I+V E G + + R A+D+VL+D+ +P Sbjct: 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIG 61 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 GL+ R+I + + V+ML+ + E A+ + GAAGYL+K P++++ AIR G Sbjct: 62 GLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSG 121 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 Y+++ +A+ +A L+Q A SLS RE Q+ +I G+ V EI++QL LSP Sbjct: 122 QRYIASDIAQQMA--LSQIEPAKTETPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 179 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQL 217 TV++YR R+ K DV + A+RH L Sbjct: 180 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >uvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 218 Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 2/210 (0%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 I +LL DDH +VR G+++IL D I+V E + G + + R A+D+VL+D+++P Sbjct: 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIG 61 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 GL+ R+I + + ++ML+ + E A+ + GAAGYL+K P++++ AIR G Sbjct: 62 GLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSG 121 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 Y+++ +A+ +A L+Q + SLS RE Q+ +I G+ V EI++QL LSP Sbjct: 122 QRYIASDIAQQMA--LSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 179 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQL 217 TV++YR R+ K DV + A+RH L Sbjct: 180 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209 >ZuvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 2/210 (0%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 I +LL DDH +VR G+++IL D I+V E + G + + R A+D+VL+D+++P Sbjct: 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIG 61 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 GL+ R+I + + ++ML+ + E A+ + GAAGYL+K P++++ AIR G Sbjct: 62 GLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSG 121 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 Y+++ +A+ +A L+Q + SLS RE Q+ +I G+ V EI++QL LSP Sbjct: 122 QRYIASDIAQQMA--LSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 179 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQL 217 TV++YR R+ K DV + A+RH L Sbjct: 180 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209