BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0233.p         (319 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2419_2 [T] COG0642 Signal transduction histidine kinase Dra De...   107   3e-23
PA0600_3 [T] COG4585 Signal transduction histidine kinase Pae Ps...    86   1e-16
RSc0289_2 [T] COG4585 Signal transduction histidine kinase Rso R...    83   1e-15
RSc0191_2 [T] COG4585 Signal transduction histidine kinase Rso R...    72   2e-12
VC1276 [T] COG4564 Signal transduction histidine kinase Vch Vibr...    60   5e-09

>DR2419_2 [T] COG0642 Signal transduction histidine kinase Dra Deinococcus
           radiodurans
          Length = 406

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 26  LALLLDSTGEGIYGIDLEGRCTFINRAGAAMLGYAPAEVLGHNMHELVHHSHEHGGHYPE 85
           +ALLL S GEGI+G+D +G  TF+N A + +LGY+ +E+LG   H  +HH H  G  +  
Sbjct: 39  MALLLTSAGEGIFGLDRDGNNTFVNPAASELLGYSVSELLGQPSHAKLHHHHADGTPHLL 98

Query: 86  AECPILKAFRKGESCRVDQEVFWRADGSCFATEYSSYQIIDG-GQVRGAVIAFSDISKRR 144
           +ECPI +  R G+  RV+ +VFW  DG      Y     +D  G+V GAV+ F D+S++ 
Sbjct: 99  SECPISQTLRDGQQRRVEADVFWHRDGHPVPVAYVVTPTLDERGEVEGAVVMFQDVSEQV 158

Query: 145 QAEEQLQRAKAELEVRVAE 163
           +A  +L+ A   L++  A+
Sbjct: 159 RAHAELEDALHHLQLTNAD 177


>PA0600_3 [T] COG4585 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 244

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 167 ELSAALRQVRQLSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAKRVADLDPVA 226
           EL  +  Q+R+LSAH  SVRE+E+ RIARE+HDELG +L  LKL+ +      AD     
Sbjct: 21  ELGESRAQLRELSAHLESVREEEKARIAREVHDELGQVLTVLKLETSMCELAYADAQEGL 80

Query: 227 R-KCEAMSRLIETAVDNVGRIITDLRPSILDHQGLIAALEWQVQEFSEATELPCEVEF 283
           R +   M +LI      V  + T LRP ILD  G+ +A+EWQ + F   T++PC VE 
Sbjct: 81  RERLGNMKKLIAQLFQLVRDVATALRPPILD-AGIGSAVEWQARRFEARTQIPCLVEV 137


>RSc0289_2 [T] COG4585 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 270

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 8/137 (5%)

Query: 148 EQLQRAKAELEVRVAERTRELSAALRQVRQLSAHAHSVREDERTRIAREIHDELGSLLVA 207
           ++L+    +L+  V ERTR+LS        L+AH   V EDE+TR+ARE+HDELG+LL A
Sbjct: 9   DKLEEESQKLDRMVRERTRQLS-------DLAAHLQRVTEDEKTRLARELHDELGALLTA 61

Query: 208 LKLDVNWMAKRVADLDP-VARKCEAMSRLIETAVDNVGRIITDLRPSILDHQGLIAALEW 266
            K+D++W+  R+   +P VA K   +   ++  +    R+I DLRP+IL + GL  A+  
Sbjct: 62  TKMDLHWLRSRITVSEPAVADKITRVMAHVDQGIQIKRRLIEDLRPTILLNLGLAEAITQ 121

Query: 267 QVQEFSEATELPCEVEF 283
             ++     +   EV  
Sbjct: 122 LTEDVGTRNQWQTEVSL 138


>RSc0191_2 [T] COG4585 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 235

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 13/122 (10%)

Query: 170 AALR----QVRQLSAHAHSVREDERTRIAREIHDELGSLLVALKLDVNWMAKRVADLD-- 223
           AALR    +++ LS    + RE+ER RIARE+HD+LG  L ALK+D++ +A   ADL   
Sbjct: 5   AALRRSQEELQHLSDSILASREEERHRIARELHDDLGQRLSALKMDISLLA---ADLQAE 61

Query: 224 ----PVARKCEAMSRLIETAVDNVGRIITDLRPSILDHQGLIAALEWQVQEFSEATELPC 279
                +  + EAM R+I+  +  V +I  DLRP +LD   L+ A+EW  + F +   L  
Sbjct: 62  GGDRTLIAQTEAMQRVIDETISAVRQISADLRPPLLDELELVPAIEWIAKNFRQRFGLIV 121

Query: 280 EV 281
            V
Sbjct: 122 NV 123


>VC1276 [T] COG4564 Signal transduction histidine kinase Vch Vibrio
           cholerae
          Length = 451

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 1/102 (0%)

Query: 186 REDERTRIAREIHDELGSLLVALKLDVNWMAKRVADLDPVARKCEAMSRLIETAVDNVGR 245
           +EDE+  +ARE+HD +  LLV+ K  +  +A ++ D   +    ++   L+ TA++ V R
Sbjct: 247 QEDEKKHLARELHDGINQLLVSSKCHLELLANQLNDPKQIVHLEKSQHSLM-TAINEVRR 305

Query: 246 IITDLRPSILDHQGLIAALEWQVQEFSEATELPCEVEFDIAP 287
           I   LRPS LD  GL AAL   +++F   +++  E+ FD  P
Sbjct: 306 ISHHLRPSALDDLGLQAALTTLLEDFKLHSQMEIEMLFDTQP 347