BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0205.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3568 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 89 9e-18 mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 84 3e-16 PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 83 5e-16 Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma a... 82 1e-15 AGl1783 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 81 2e-15 >AGl3568 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 262 Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 13/218 (5%) Query: 15 AGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGHF 74 G +T+ ++A LR I +LLPG +E ++A L VS+TPVREA++RL EG V Sbjct: 24 GGNMTNRIHALLRKLIVEVKLLPGRALSEKEIAALLNVSKTPVREAIIRLSEEGFVTVVP 83 Query: 75 RNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGDR 134 + G + PID+ R+ +R LE AV A ++ + + + C R Sbjct: 84 QGGTYISPIDVQRYMEACFIRFKLEEGAV--------IEATKRHSLEDIARLKTCLSNQR 135 Query: 135 L----PDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYG-DCIDDT 189 + + LDE FH + AA P A +V Q ++ MR L + + Sbjct: 136 IAAKDEEFTNFFLLDEEFHKTIFAAARLPGAWSVVNQAKGEMDRMRHLKRVFAVRRTEKV 195 Query: 190 YAEHRAILDAIARSDAALAGELIARHIEDSHTVVERLT 227 EH AI+D I D A E + RH+ T + L+ Sbjct: 196 IEEHEAIVDGIESGDVEAAREAVQRHLGSLETKIAELS 233 >mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 224 Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 10/209 (4%) Query: 14 RAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGH 73 RA L D +Y +R+ I +L PG+ E +AE L VSRTPVREA+ R+ EGLV+ Sbjct: 10 RALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKIL 69 Query: 74 FRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGD 133 + G V PI A Y +R LE+ + R+ + ++ PA + L A Sbjct: 70 AQTGTYVAPISRADLEEAYVIRRALEMESARR-AAAKLTPASAELLEDNMAAHKLAISRG 128 Query: 134 RLPDGLAVAALDEAFHCALVQAAGNP---EADTVYRQLANQLRIMRRLDFAYGDCIDDTY 190 R + LD+ FH + + G P A + + ++ R + YG + T Sbjct: 129 RYATAI---QLDDVFHRTIAEICGLPMIWRAVDISKAQMDRGRYLAIPKPGYG---EQTI 182 Query: 191 AEHRAILDAIARSDAALAGELIARHIEDS 219 +H AILDA+ R DA A + + H+E S Sbjct: 183 EQHEAILDALKRHDAEGAAQAMENHLETS 211 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 19/234 (8%) Query: 1 MTSSQAPADLATRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREA 60 MT + P ++A L++ V+ ++ I + + PG + +E ++A +SR P+REA Sbjct: 1 MTQNPPPLEIAHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREA 60 Query: 61 LMRLQSEGLVRGHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQL- 119 + RL+ L+ G VV + A LYE+RE LE A R L + R++ A +L Sbjct: 61 IHRLEGLRLLVRVPHVGARVVSLSHAELIELYEIRESLEGMACR-LAAERMSQAEIDELR 119 Query: 120 ----VAEQGAIWQCAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQL-RI 174 E+ +Q G +G D FH ++Q +GN T+ R L +L ++ Sbjct: 120 RVLDTHERDEAFQAGRGYYQQEG------DYDFHYRIIQGSGNA---TLTRMLCGELYQL 170 Query: 175 MRRLDFAYGDCID---DTYAEHRAILDAIARSDAALAGELIARHIEDSHTVVER 225 +R Y + +AEH ILDAIA D LA L+ RHI S +ER Sbjct: 171 VRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHISASRRNIER 224 >Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma acidophilum Length = 217 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 9/216 (4%) Query: 18 LTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGHFRNG 77 L+ +Y+ + D+I + RL G EN + + VS+TP+REA++ L++E +V+ +NG Sbjct: 7 LSKKIYSYIIDEIVSGRLRMGQIIDENKIKDVFNVSKTPIREAIISLENEEVVK---KNG 63 Query: 78 --WEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGDRL 135 + V I+ ++E R LE A L + R+ RQ+L + I + + Sbjct: 64 KSYFVSFIEPEEIDQIFEARRELESIAAF-LAAQRMQ---RQELKQMENIITKLKDVNGE 119 Query: 136 PDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTYAEHRA 195 D + +A L+ FH + +A+GN ++ + +LRI+R F + +D Y EH Sbjct: 120 TDPIELANLNGKFHSLIAKASGNKYIESCVNSMRLKLRIVRVTLFTSIERREDEYKEHFG 179 Query: 196 ILDAIARSDAALAGELIARHIEDSHTVVERLTIARL 231 I +AI DA A L+ H D ++ I +L Sbjct: 180 IFEAIKNKDADKARSLMFNHETDVWEYTKKYIIPKL 215 >AGl1783 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 3/199 (1%) Query: 18 LTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGHFRNG 77 + D +YA+L+ I + PG +EN++ + SRTPVREAL RL+ +GL+ G Sbjct: 66 VVDQIYAALKSAILSREFFPGQAVSENEIGQSFSSSRTPVREALSRLRDDGLIVTLPSRG 125 Query: 78 WEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGDRLPD 137 V + S +RE LE+ AV +LC I P Q++ E Q A R D Sbjct: 126 TYVSKLSEKHIRSAQFIREALEVAAVGRLCQIGITPEAEQEI--EHALSGQRAAMHR-GD 182 Query: 138 GLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTYAEHRAIL 197 A D+ FH AL A G +T+ + + L +R L + +EH A+ Sbjct: 183 RKAFRVHDDQFHSALAAATGLERLETLLIREKSGLDRLRALAITDEAHMARLLSEHEAVY 242 Query: 198 DAIARSDAALAGELIARHI 216 A+ + LA E + +H+ Sbjct: 243 GAVKAGNETLAAEELRKHL 261