BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0189.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc5113 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 192 5e-49 AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 176 3e-44 SMb20441 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 167 2e-41 YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis 144 3e-34 CC2813 Non COG 142 5e-34 >AGc5113 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 230 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 144/220 (65%), Gaps = 1/220 (0%) Query: 7 EPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYIEV 66 EP+RLY+QI+DQ+R+LI GEF G+RLP+EREL+ +LGVSRPSLREALIALE++ +E+ Sbjct: 9 EPRRLYQQIADQIRELIDVGEFLPGTRLPAERELAQKLGVSRPSLREALIALEIDNTVEI 68 Query: 67 RMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEA 126 RMGSG+YV +Q H S + P EL++AR +EG AA + + IAA+ + Sbjct: 69 RMGSGVYVSTEALQ-TTHHTKSLGDSPSELMQARAALEGATIVLAANRMTDETIAALRQI 127 Query: 127 YSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHSHFDGT 186 + M EAG PL+ DRLFH+ +AE +GNSVL LV LFD R P+ +L F+ Sbjct: 128 LNTMQKEIEAGRKPLDQDRLFHVTIAEQSGNSVLARLVANLFDERHSPISAQLRVKFEDR 187 Query: 187 RVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRY 226 W A++EH I+ AL ++P A+AAM H++ + R+ Sbjct: 188 DTWTRALQEHEAILAALELKDPLLAQAAMHIHLEGSKRRW 227 >AGl3126 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 1/227 (0%) Query: 5 AIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYI 64 A+EP+RLYR +++Q+R LI GE G RLP+ER+L+ + GVSRP++REALI LEVEG+I Sbjct: 4 ALEPRRLYRLVAEQIRLLIESGELTEGQRLPAERDLAERFGVSRPTVREALIVLEVEGHI 63 Query: 65 EVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVE 124 +RMGSG+YV A Q + + GP E+++AR +IE +A AA+ + + IA ++ Sbjct: 64 HIRMGSGVYVNAAGRQAREKPPVPDAHGPFEILQARCIIESAIAEEAARLATPECIAKLD 123 Query: 125 EAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDAR-LGPLFERLHSHF 183 + M ++ L DR FH +A+ GNS L ++D R L P FE+L S+F Sbjct: 124 DIIERMAGALDSSPQALNFDRAFHTAIADIIGNSALNRFTGLIYDERSLSPFFEKLASYF 183 Query: 184 DGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANL 230 +G W A++EH I A+ +PE AR AMR+H+ ++ R+S + Sbjct: 184 EGPYTWNLAVQEHRAIRDAIAANDPEGAREAMRQHLTLSQKRFSESF 230 >SMb20441 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 246 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/226 (45%), Positives = 141/226 (62%), Gaps = 1/226 (0%) Query: 5 AIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYI 64 A+E +RLYRQ++DQ+R LI GE A GSRLP+EREL+ GVSRP++REALI LEVEG+I Sbjct: 4 AVESRRLYRQVADQMRALIERGELAHGSRLPAERELAQMFGVSRPTIREALIVLEVEGFI 63 Query: 65 EVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVE 124 ++RMGSGIYV A P EGP EL+RAR ++E +A AA+ + I+ ++ Sbjct: 64 DIRMGSGIYVTARPAPAADAP-PEDFEGPFELLRARAVVECAIAEEAARLARPEHISVLD 122 Query: 125 EAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHSHFD 184 + + M A E L DR FH+ ++ N L V + D R+ P FE+L S+F+ Sbjct: 123 DNLARMAAALEDRRLALAIDREFHVIVSSIIANQTLNRFVGSIHDMRMTPYFEKLASYFE 182 Query: 185 GTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANL 230 T W+ A+EEH +I A+ +P ARAAMR H+D + R SA+ Sbjct: 183 NTETWRAAMEEHRVIRDAIALGDPAAARAAMRAHLDQSQLRLSASF 228 >YPO1279 [K] COG2186 Transcriptional regulators Ype Yersinia pestis Length = 266 Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 3 IEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEG 62 ++ I+ RLY+++ QLR+ IV G ++VG RLP ER+++ VSR +REALI LE+E Sbjct: 14 MQEIKVMRLYQEVGSQLREAIVSGRYSVGDRLPPERDIAENFSVSRSVVREALIMLELEK 73 Query: 63 YIEVRMGSGIYVCAPP---MQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQ 119 +EVR GSG+YV P + E + GP EL++AR+++E EVA AA +K Sbjct: 74 LVEVRKGSGVYVVNVPTMSLNGESATSIDSGYGPFELLQARQLLESEVAAFAAMQATKAD 133 Query: 120 IAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGP-LFER 178 I + A A AG AD LFH LA++T NSVL +V Q + R +++ Sbjct: 134 IIKMRNAIEQGKAALTAGAIDESADELFHCLLAQSTQNSVLANMVAQTWQVRKSSAMWQG 193 Query: 179 LHSHF-DGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMD 220 HSH D + WQ +++H I+QA+ R+ + A+ AM +H++ Sbjct: 194 AHSHTADFSYRWQ-WLDDHQKILQAVLRRDSKAAKQAMWQHLE 235 >CC2813 Non COG Length = 249 Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 133/238 (55%), Gaps = 4/238 (1%) Query: 10 RLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYIEVRMG 69 +LYR+I+D + I G + +G RLP+EREL+ Q GVSRP+LREA+IALE+ G IE R G Sbjct: 6 KLYRKIADSVADDIEAGRYRLGDRLPTERELAEQFGVSRPTLREAMIALEMLGMIEARHG 65 Query: 70 SGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEAYSL 129 GIYV A ++ E G ELI AR + EGE A AA + +QIAA+E + Sbjct: 66 LGIYVTATARPLAPSPEIDFEIGAFELIEARRLFEGEAAALAATSITDEQIAALEGLLTR 125 Query: 130 MIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDAR-LGPLFERLHSHFDGTRV 188 M H E I +ADR FH+ +A ATGN ++ + L+D R PL + + G + Sbjct: 126 M--HEEEEIRGEDADREFHLTIARATGNGAIIATIETLWDWRNRSPLARNILARARGMGL 183 Query: 189 WQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIREYGNRQQQESAPRK 246 + I EH ++ AL+ R+P AR AMR H++ E R Q+E+ R+ Sbjct: 184 -EPRIAEHRRVVDALKARDPAAARQAMRDHLERVIDHLLHATETEAVQRAQEETNARR 240