BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0167.p (373 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia sol... 296 5e-80 SMc00782 Non COG 190 4e-48 AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium ... 178 2e-44 DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus ra... 164 2e-40 YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis 122 1e-27 >RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia solanacearum Length = 358 Score = 296 bits (758), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 168/375 (44%), Positives = 228/375 (60%), Gaps = 19/375 (5%) Query: 1 MNDHSDLPE-SSLPSPSVPAAPGNFATALRDSADHSAPQAFTFSGRGSEYFRIWIVNLLL 59 MND + P P+P+VP P F G GSEYFRIWIVNLLL Sbjct: 1 MNDIAREPVLGGAPAPAVPQ-----------------PLRVRFCGSGSEYFRIWIVNLLL 43 Query: 60 SIVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPVAILKGRILAVVLIVVYQIAGYI 119 +IVTLGIYSAWAKVR L+YFY NT + GASFDYHG+P AILKGR + VL + + ++G + Sbjct: 44 TIVTLGIYSAWAKVRTLQYFYRNTQLGGASFDYHGSPTAILKGRAIIFVLALAFNLSGQV 103 Query: 120 NLLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRFGFRGSFGGAFKNFLLWPMMSGF 179 + +L L+ A+ L PWL+ RSL+F++ N+SYRG+RF F G A+K FLLWP+++ F Sbjct: 104 SPVLTLLLLAAIGLVFPWLLVRSLRFRMANSSYRGLRFAFTGKDAQAYKVFLLWPVLTVF 163 Query: 180 SLGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFYLAFAAGIGGWI-AGSVLIVVGF 238 + LL P A QRFK++QH RFG T F F + G FY + G I A + VV Sbjct: 164 TFNLLAPFAHQRFKQYQHRNTRFGTTSFDFSATAGQFYGVYLRTFGMAILAVMAVGVVVV 223 Query: 239 GGVALFQSVQSGAGSIAAFGLMLFALYAWSFLIIPLWITLLQNLVWNNTRLGEHRFESRM 298 + + G A LM+ A+YA + P ++ LQN+VWN+T LG HRF+S++ Sbjct: 224 LAGVSAAAGAASGGRAIAVSLMVLAMYAAMLFLGPYFLARLQNVVWNHTTLGAHRFQSQV 283 Query: 299 RWGRTAIILLTNVLGIAFTLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSA 358 G+ I ++N + TLGLFTPFA++R RY++ESVT+L AGSLD F+A + A Sbjct: 284 SAGKLFWIFISNAALLIVTLGLFTPFARVRSARYKLESVTMLAAGSLDTFVAGESTRVGA 343 Query: 359 TGEGLGDLLDFDLSM 373 G+ D D D+++ Sbjct: 344 LGDAAVDWYDIDIAL 358 >SMc00782 Non COG Length = 370 Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 190/354 (53%), Gaps = 31/354 (8%) Query: 38 QAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPV 97 Q +F+G GSEYF IWIVN+LL+I+TLGIYSAWAKVRR RYFY NT + G F+YH + Sbjct: 24 QRLSFTGSGSEYFGIWIVNILLTIITLGIYSAWAKVRRNRYFYGNTILLGRGFEYHASGG 83 Query: 98 AILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRF 157 IL GR++ +V+Y I L+G+ + ++ PWL+ R L+F TSYR +RF Sbjct: 84 QILIGRLIVFAYLVLYNIMLTFVPLVGIGLGVLMLFFVPWLVARGLRFSARVTSYRNVRF 143 Query: 158 GFRGSFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFY 217 F G GGAF F++ P+++ +LG+L P+A++ R+ N R+G FS +G Y Sbjct: 144 DFVGGAGGAFLAFIIGPVLAALTLGILAPLASRWSYRYVGNNLRYGQKPFSTDPPLGRLY 203 Query: 218 LAFAAGIGGWIAGSVLIVVG--------FGGVALFQSVQSGA--GSIAAFGLM------- 260 W+A + ++V+G F GVAL +V GA S A G Sbjct: 204 RT-------WVAPAAVLVLGMLIGGFFVFLGVALVNAVAEGAELSSQALQGFTGLLLVLG 256 Query: 261 ---LFALYAWSFLIIPLWITLLQNLVWNNTRL-GEHRFESRMRWGRTAIILLTNVLGIAF 316 LFA++ + LI + ++N+ W+ T G HR S + R I ++N++ Sbjct: 257 YLLLFAIFGLAALI---YRAGVRNVAWSATSFDGRHRLLSDLSRLRYTWIAVSNLIVTLV 313 Query: 317 TLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATGEGLGDLLDFD 370 TLGL P+A +RM RY E + G + + ++ GSA G D+ FD Sbjct: 314 TLGLMRPWAAVRMARYVNEHTGVRFEGDVGELLSQIAQEGSAVGAEFMDIEGFD 367 >AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 367 Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 32/365 (8%) Query: 31 SADHSAPQAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGASF 90 SAD A + +F+G EYF IWIVN+LL+I+TLGIYSAWAKVRR RYF NT +AG +F Sbjct: 7 SADRHAIERGSFNGNAKEYFGIWIVNILLTIMTLGIYSAWAKVRRKRYFNGNTLLAGRAF 66 Query: 91 DYHGNPVAILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYNT 150 YH I KGR++A IV Q+ G I+ L + L++ PW+I RS++F T Sbjct: 67 GYHATGGQIFKGRLIAFAFIVFSQLVGLIHPFLVFAPTILLLIFLPWVITRSIRFNARVT 126 Query: 151 SYRGIRFGFRGSFGGAFKNFLLWPMMSGFSLGLLMPMAAQRFKRFQHNEARFGATHFSFH 210 SYR +RF F G+ GAF + LL ++ S+G+L P+A++ R+ + +G FS Sbjct: 127 SYRNVRFDFVGTAWGAFVSILLGSFVALLSIGILAPLASRWANRYIVSNLHYGDRRFSTD 186 Query: 211 GSVGAFYLAFAAGIGGWI---------AGSVLIVVGFGGVALFQSVQSGAGSIAAF--GL 259 +GA Y A WI + ++ F + L Q+ G+ +A Sbjct: 187 PKIGALYRA-------WIIPALLVVVGGVLAVFLLIFLAMVLVQAAGIGSRELATAPENY 239 Query: 260 MLFALYAWSFLIIPLWITLL-------------QNLVWNNTRL-GEHRFESRMRWGRTAI 305 + L+ ++I L + +L +N+V ++T L G+H S + GR Sbjct: 240 EIVTLFGLGQILINLLVAMLIYGFASTVYKAGVRNVVVSSTLLDGKHELHSDLHRGRYLW 299 Query: 306 ILLTNVLGIAFTLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATGEGLGD 365 I+ +N++ FT GL P+A +R +Y +E + + G + + ++S E+ G+A D Sbjct: 300 IVFSNLIVTIFTFGLMRPWAAVREAQYAVERMGISFKGDMGEVLSSMEATGAAVSAEYMD 359 Query: 366 LLDFD 370 + F+ Sbjct: 360 MEGFE 364 >DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus radiodurans Length = 388 Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/395 (32%), Positives = 200/395 (50%), Gaps = 47/395 (11%) Query: 8 PESSLPSPSVPAAPGNFATALRDSADHSAPQAFTFSGRGSEYFRIWIVNLLLSIVTLGIY 67 P+ P ++ A P A A + + H+ P F+G+ SEYFR+WIVNL L+++TLG+Y Sbjct: 8 PQDLPPGQALLATPLGTANAPQAARVHTYP--LRFTGQASEYFRVWIVNLALTVITLGLY 65 Query: 68 SAWAKVRRLRYFYDNTSVAGASFDYHGNPVAILKGRILAVVLIVVYQIAGYINLL----- 122 + WA++R +Y Y +T + +F+Y +P A+L+G ++ V +Y A + Sbjct: 66 TPWARIRTRQYLYGHTWLDDQNFEYTASPFALLRGYLIVVAFFGLYTAAQQLQFTGWEWV 125 Query: 123 ---LGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRFGFRGSFGGAFKNFLLWPMMSGF 179 LGL+ A+A PWL+ +S++F+ +T +RG+RF F GS G A+ ++ + + + F Sbjct: 126 TGALGLLFAVAY----PWLVRQSMRFQARSTVHRGLRFRFTGSLGDAYVSYGVANIAAVF 181 Query: 180 SLGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFYLAFAAGIGGWIAGSVLIVVGFG 239 S L +P A +R+Q + +G F GS+G FYL IG +AG+ L V+G G Sbjct: 182 SGSLALPWAWFMQRRYQADGLAYGTARGHFRGSLGPFYL-----IG--LAGAGLTVLGIG 234 Query: 240 GVALFQSVQSGAGSIAAF----------GLMLFALYAWSFLIIPLWITLLQNLVW----- 284 L + GA +IA +L + +F++ L + +L + W Sbjct: 235 ---LLAGLAIGAATIAGVLGDLNLEQLDTDLLTSAVVVAFVLGYLALAVLYGIAWQYVRA 291 Query: 285 -------NNTRL-GEHRFESRMRWGRTAIILLTNVLGIAFTLGLFTPFAQIRMMRYRIES 336 NN L G R ++ R I L N L F+LGL TP+ IR RY + Sbjct: 292 ATMHYVLNNFELGGVVRTQATFSPWRLVWINLANTLARIFSLGLLTPWTVIRTNRYLLGH 351 Query: 337 VTLLPAGSLDDFIASSESPGSATGEGLGDLLDFDL 371 V + SLDDF A+ SA GE +LLD ++ Sbjct: 352 VQVRAIVSLDDFSAAQTEDESAVGEAATELLDINI 386 >YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis Length = 398 Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/138 (46%), Positives = 90/138 (65%) Query: 30 DSADHSAPQAFTFSGRGSEYFRIWIVNLLLSIVTLGIYSAWAKVRRLRYFYDNTSVAGAS 89 +++ + + F G G EYF IW+VNLLL+I+TLG+YSAWA VRR RYFY NT + G Sbjct: 4 NASQNKSLHRVAFKGEGGEYFSIWLVNLLLTIITLGVYSAWATVRRRRYFYGNTELNGDR 63 Query: 90 FDYHGNPVAILKGRILAVVLIVVYQIAGYINLLLGLIAALALMLASPWLIWRSLQFKLYN 149 FDYH P+ ILKGR++ + ++++ I I LGL+ AL L+ PW+I RS ++ Sbjct: 64 FDYHAEPIEILKGRLMVIGGVILFYILLAIAPTLGLLVALVLLALIPWIIIRSWRYNAIM 123 Query: 150 TSYRGIRFGFRGSFGGAF 167 TSYRG+RF + G A+ Sbjct: 124 TSYRGVRFNYHCQTGQAY 141