BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0163.p (287 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 362 e-100 AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 357 2e-98 SMa2293 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 348 8e-96 YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 192 5e-49 gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 189 5e-48 >PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 296 Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/281 (65%), Positives = 214/281 (76%), Gaps = 2/281 (0%) Query: 2 YLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTD 61 +LPLNALRAFE SARHLSFTRAA EL VTQ AVS QVK+LE+RLGV LF+RLPRGL LT Sbjct: 5 HLPLNALRAFEASARHLSFTRAAIELCVTQAAVSHQVKSLEERLGVALFKRLPRGLMLTH 64 Query: 62 EGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVD 121 EG +LLPV+ SF RIA +L +FE G R+VLTVG VGTF VGWL+PRL +FQ +HPF+D Sbjct: 65 EGESLLPVLCDSFDRIAGLLERFEGGHYRDVLTVGAVGTFTVGWLLPRLEDFQARHPFID 124 Query: 122 LRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEIAARLRTPSDLA 181 LRL T+NNRVD+A EGLDYAIRFG GAWHGTEA LFEAPL +C PE+AA+L +P+DL Sbjct: 125 LRLSTHNNRVDIAAEGLDYAIRFGGGAWHGTEALALFEAPLTVLCCPEVAAQLHSPADLL 184 Query: 182 AETLLRSYRSDEWHRWFAAAAAP--CPPLRGFVFDSSLALAEAAAQEAGVALLPVMMFER 239 TLLRSYR+DEW WF AA P P R VFD+SLA+ EAA Q GVAL P MF R Sbjct: 185 QHTLLRSYRADEWPLWFQAAGLPAHAPLTRSIVFDTSLAMLEAARQGVGVALAPAAMFAR 244 Query: 240 ELRQGRLVCPFEQRIVLGAYWLTRLKSRPQTAAMAAFRTWL 280 +L + PF + G+YWLTRL+SR +T+AM AFR WL Sbjct: 245 QLASESIRRPFATEVSTGSYWLTRLQSRGETSAMLAFRGWL 285 >AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 292 Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/281 (63%), Positives = 215/281 (76%), Gaps = 2/281 (0%) Query: 2 YLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTD 61 +LPLN LRAFE SARHLSFTRAA EL VTQ AVS QVK LE+RLGV LF+RLPRGL +T Sbjct: 5 FLPLNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITA 64 Query: 62 EGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVD 121 EG ALLP V SF ++A L + E G+ RE+L +GVVGTFAVGWL+PRL FQ++HPF+D Sbjct: 65 EGEALLPTVTSSFDQMATTLDRIEAGQVRELLFLGVVGTFAVGWLLPRLAAFQKRHPFID 124 Query: 122 LRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEIAARLRTPSDLA 181 +R+ TNNNRVD+A EGLD+AIRFG G+WHGT+A RLFEAPL+P+C P++A L+ P+DL Sbjct: 125 VRVSTNNNRVDMAAEGLDFAIRFGQGSWHGTDAFRLFEAPLSPLCTPKLAEMLKEPADLM 184 Query: 182 AETLLRSYRSDEWHRWFAAAA-APCPPLR-GFVFDSSLALAEAAAQEAGVALLPVMMFER 239 TLLRSYR+DEW WFAAA +P + G VFD+SL + EAA Q GVAL P MF R Sbjct: 185 DATLLRSYRADEWSTWFAAAGVSPAAQVNAGIVFDTSLGMMEAALQGLGVALAPPSMFSR 244 Query: 240 ELRQGRLVCPFEQRIVLGAYWLTRLKSRPQTAAMAAFRTWL 280 L G ++ PF I LG+YWLTRL+S+PQT+AM AF WL Sbjct: 245 HLTSGAVMQPFPVTISLGSYWLTRLQSKPQTSAMQAFSDWL 285 >SMa2293 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 294 Score = 348 bits (893), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 186/281 (66%), Positives = 218/281 (77%) Query: 3 LPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDE 62 LPLNALRAFE SARH SFTRA EL V+QTA+S QVK+LE LGV LFRRLPRGLALTDE Sbjct: 6 LPLNALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLALTDE 65 Query: 63 GLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVDL 122 G AL PV++ F R+ L++FE+G EV+TVGVVGTFA+GWLM RL +F HP +DL Sbjct: 66 GSALAPVMSDVFKRMCATLSRFEEGNFHEVVTVGVVGTFAIGWLMERLPDFHDAHPSLDL 125 Query: 123 RLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEIAARLRTPSDLAA 182 R+L+NNNRVDLAG+GLD+AIRFGDG+WHGT+A L A L+P+C+P+IAARL+ P DLA Sbjct: 126 RILSNNNRVDLAGDGLDFAIRFGDGSWHGTDAMHLSAAQLSPVCSPQIAARLKEPVDLAR 185 Query: 183 ETLLRSYRSDEWHRWFAAAAAPCPPLRGFVFDSSLALAEAAAQEAGVALLPVMMFERELR 242 LLRSYRSDEW +WF AA A P LRG VFD+SLALAEAAA+ +G ALLP+ MFE L Sbjct: 186 IELLRSYRSDEWAQWFRAAGAQPPILRGMVFDTSLALAEAAARGSGAALLPITMFEHYLE 245 Query: 243 QGRLVCPFEQRIVLGAYWLTRLKSRPQTAAMAAFRTWLKVQ 283 GRLV PF+ I G YWLT LKSR T M AF++WLK Q Sbjct: 246 SGRLVQPFDITISAGDYWLTWLKSRQFTRGMIAFKSWLKQQ 286 >YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 305 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 5/286 (1%) Query: 4 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDEG 63 PLNALRAF+ +ARHLSFT+AAEEL VTQ AVS Q+K+LE LG+ LFRR R L LT+EG Sbjct: 7 PLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEG 66 Query: 64 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVDLR 123 + + + F I + + + + LTV + +FA+ WL+PRL F +P +D+R Sbjct: 67 QSYYLDIKEIFTSINEATRKLQARSAKGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126 Query: 124 LLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEIAA---RLRTPSDL 180 + + D + +D AI +G G W G ERL+ L P+CAP + L+ PSDL Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGNWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPSDL 186 Query: 181 AAETLLRSYRSDEWHRWFAAAAAPCPPL-RGFVFDSSLALAEAAAQEAGVALLPVMMFER 239 A TLL +W + P + +G +F S + +AA G+AL+ +M + Sbjct: 187 ANHTLLHDTSRRDWLAYTRQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIALVNNVMAQS 246 Query: 240 ELRQGRLVCPFEQRIV-LGAYWLTRLKSRPQTAAMAAFRTWLKVQA 284 E+ GRLVCPF +V A++L S+ + +AAFR W+ +A Sbjct: 247 EIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292 >gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 305 Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 5/286 (1%) Query: 4 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDEG 63 PLNALR F+ +ARHLSFTRAAEEL VTQ AVS Q+K+LE LG+ LFRR R L LT+EG Sbjct: 7 PLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEG 66 Query: 64 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVDLR 123 + + + F ++ + + + + LTV ++ +FA+ WL+PRL F +P +D+R Sbjct: 67 QSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126 Query: 124 LLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEI---AARLRTPSDL 180 + + + D + +D AI +G G W G E+L+ L P+C+P + L+TP DL Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDL 186 Query: 181 AAETLLRSYRSDEWHRWFAAAAAPCPPL-RGFVFDSSLALAEAAAQEAGVALLPVMMFER 239 A TLL +W + + +G +F S + +AA GVAL +M + Sbjct: 187 AKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQS 246 Query: 240 ELRQGRLVCPFEQRIV-LGAYWLTRLKSRPQTAAMAAFRTWLKVQA 284 E+ GRLVCPF +V A++L S+ + +AAFR W+ +A Sbjct: 247 EIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292