BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0153.p (443 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0009 [T] COG2204 Response regulator containing CheY-like rece... 472 e-133 RSc0332 [T] COG2204 Response regulator containing CheY-like rece... 469 e-132 AGl3046 [T] COG2204 Response regulator containing CheY-like rece... 468 e-131 SMb20613 [T] COG2204 Response regulator containing CheY-like rec... 458 e-129 PA1335 [T] COG2204 Response regulator containing CheY-like recei... 444 e-124 >RSp0009 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 454 Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust. Identities = 250/430 (58%), Positives = 307/430 (71%), Gaps = 7/430 (1%) Query: 11 LLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQVL 70 LIED+ VR QAL L V A AE AL L P V+V+DVRLPG GL VL Sbjct: 20 FLIEDDDVVRLGCEQALTLADLPVRPFADAESALAALAAQTPSVVVSDVRLPGRDGLAVL 79 Query: 71 AHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSLVL 130 ++ D LPVI+VTGHGDVSMAV AMRAGAYDF+EKPF S+ L+++ RA EKR L Sbjct: 80 REMLRHDRQLPVILVTGHGDVSMAVTAMRAGAYDFIEKPFHSERLVDVVRRALEKRRLTA 139 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQLH 190 EN RLR A + LVGQS ++ VR L+ +L P D D+L+ G+TG+GK+V+AR +H Sbjct: 140 ENLRLRAAL-QGRQAFALVGQSQTMQDVRRLVAALAPTDADILVTGETGAGKDVLARAIH 198 Query: 191 AASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLFLDEIES 250 S R+GPFVALNC ALPE+VFESE+FGHEAGAFTGA +RRIGK+EYA+GGTLFLDEIES Sbjct: 199 EGSRRRGPFVALNCAALPESVFESEMFGHEAGAFTGANRRRIGKMEYADGGTLFLDEIES 258 Query: 251 MPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDLYYRIGV 310 MPLALQ KLLR LQER +ERLG N SV +DCRVVAA+K DL + G FR DLYYR+ V Sbjct: 259 MPLALQAKLLRALQERSIERLGSNASVPVDCRVVAAAKVDLKAAADHGAFRADLYYRLNV 318 Query: 311 VSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNVRELRNF 370 VSI LP L QR+ DIPLL+AHF Q AA+RY R P W+A M +WQ DWPGNVREL+N Sbjct: 319 VSIALPPLRQRAEDIPLLMAHFLQQAALRYDRAAPDWSAQDMMRWQHHDWPGNVRELKNV 378 Query: 371 ADRWVLGVEQIATAGVLPSPA--LSLPEQVEQFEAGLIAAALKDSEGSVAQAAERLGIPK 428 A+R+ LG++ G++ S A SL ++ E I AL+ +EGSVA+AA+ L +P+ Sbjct: 379 AERFCLGLDD----GLIASEASQHSLAGRMMAVERATIEEALRATEGSVARAADLLAVPR 434 Query: 429 KTLYDKIRKY 438 KTLYDK+ ++ Sbjct: 435 KTLYDKLNRH 444 >RSc0332 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 438 Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/433 (57%), Positives = 307/433 (70%), Gaps = 1/433 (0%) Query: 9 SALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQ 68 + L IED+ VR+ATAQ+LEL GF V A ASAEEA+ + DF GV+V+D+RLPG SGL Sbjct: 6 NVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLD 65 Query: 69 VLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSL 128 VLAH +PV++VTGHGD++MAV+AMR GA+DF+EKPF ++ L E RA E+R+L Sbjct: 66 VLAHCQSFGTGIPVVLVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRAL 125 Query: 129 VLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQ 188 LENR LR A ++G+S A+ VR LI ++ D VLING+TG+GKE+VAR Sbjct: 126 ELENRALRRELAGPAAGTRIIGRSQAMASVRALIDNVAATDAPVLINGETGTGKELVARS 185 Query: 189 LHAASGRKG-PFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLFLDE 247 LH S R PF+ALNCGA+PE +FESE+FGHEAGAFTGA KRRIGK+E+A+GGTLFLDE Sbjct: 186 LHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGTLFLDE 245 Query: 248 IESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDLYYR 307 IESMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L G FR DLYYR Sbjct: 246 IESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYR 305 Query: 308 IGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNVREL 367 + VV+IDLP L +R DI L HF AAVRY+R +P + Q + Q +WPGNVREL Sbjct: 306 LNVVAIDLPPLRERREDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVREL 365 Query: 368 RNFADRWVLGVEQIATAGVLPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQAAERLGIP 427 RN ADR VLGV + + L E+VE++E +IA L + GSV QAA+ L + Sbjct: 366 RNAADRLVLGVGRTPVVSDAAEDGMPLKERVERYERTVIAETLARTGGSVHQAADILQVG 425 Query: 428 KKTLYDKIRKYQL 440 + TLYDKI++Y L Sbjct: 426 RATLYDKIKRYGL 438 >AGl3046 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 454 Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/436 (53%), Positives = 311/436 (71%), Gaps = 6/436 (1%) Query: 9 SALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQ 68 + L++D+ +R+A Q LEL+G VT+ + AE+AL L DF G+++TDVR+PG +GL+ Sbjct: 6 TIFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGIIITDVRMPGMTGLE 65 Query: 69 VLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSL 128 HV ID DLPVI++TGHGDV MAV+A+ GAYDF+ KPF ++ ++E A RA EKR L Sbjct: 66 FFDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRALEKRRL 125 Query: 129 VLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQ 188 VLENR LR A + PL+GQ+PA+ER+RT +R + DVDVL+ G+TGSGKEVVA Sbjct: 126 VLENRALRRAAGQAEDDLPLIGQTPAMERLRTTLRHIADTDVDVLVAGETGSGKEVVATA 185 Query: 189 LHAASGR--KGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLFLD 246 LH S + KG FVALNCGALPETV ESE+FGHE GAFTGAQK+R+G++E+++GGTLFLD Sbjct: 186 LHRWSKKRSKGNFVALNCGALPETVIESELFGHEPGAFTGAQKKRVGRIEHSSGGTLFLD 245 Query: 247 EIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDLYY 306 EIESMPLA+QVK+LRVL+ R + LG NE +D RVVAA+K DL + G FREDLYY Sbjct: 246 EIESMPLAVQVKMLRVLEMREVSPLGSNEERPVDIRVVAAAKVDLGDPAERGTFREDLYY 305 Query: 307 RIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNVRE 366 R+ VV++ +P L +R +DIPLL +HF AA R+ VP +A ++ Q DWPGNVRE Sbjct: 306 RLNVVTLSIPPLRERKADIPLLFSHFVTKAANRFNMPVPQISAGTSRRLQDHDWPGNVRE 365 Query: 367 LRNFADRWVLGVEQIATAGVLPSPAL----SLPEQVEQFEAGLIAAALKDSEGSVAQAAE 422 L +FA+R VLG+E A A+ +LPE++++ EA +I L+ S G VA+ Sbjct: 366 LGHFAERVVLGLEAEPAAAPTSQSAIPASGTLPERMDEIEAHIIRETLERSNGDVAETIA 425 Query: 423 RLGIPKKTLYDKIRKY 438 LGI +KT YDK++++ Sbjct: 426 TLGIARKTFYDKLQRH 441 >SMb20613 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sme Sinorhizobium meliloti Length = 460 Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/439 (53%), Positives = 314/439 (71%), Gaps = 7/439 (1%) Query: 5 AAAPSALLIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGW 64 +AAPS LI+D++ +R+A Q LEL GFTV++ ASA EAL L+ DF G++++D+R+PG Sbjct: 2 SAAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGM 61 Query: 65 SGLQVLAHVMHIDPDLPVIVVTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQE 124 GL + ++ +DPDLP+I+VTGHGD+ MAV+A++ GAYDF+ KPF +D L++ A RA+E Sbjct: 62 DGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 121 Query: 125 KRSLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEV 184 KR LV+ENR LR A E PL+GQ+P +ER+R ++ + DVDVL+ G+TGSGKEV Sbjct: 122 KRRLVMENRSLRRAAEAASEGLPLIGQTPVMERLRQTLKHIADTDVDVLVAGETGSGKEV 181 Query: 185 VARQLHAASGRK-GPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTL 243 VA LH S R+ G FVALNCGALPETV ESE+FGHE GAFTGA K+RIG++E+A+GGTL Sbjct: 182 VATLLHQWSRRRTGNFVALNCGALPETVIESELFGHEPGAFTGAVKKRIGRIEHASGGTL 241 Query: 244 FLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFRED 303 FLDEIE+MP A QVK+LRVL+ R + LG N + +D RVVAA+K DL +A G FRED Sbjct: 242 FLDEIEAMPPATQVKMLRVLEAREITPLGTNLTRPVDIRVVAAAKVDLGDPAARGDFRED 301 Query: 304 LYYRIGVVSIDLPALNQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGN 363 LYYR+ VV++ +P L +R DIPLL +HF A+ R+ REVP +AA WPGN Sbjct: 302 LYYRLNVVTLSIPPLRERRDDIPLLFSHFLARASERFGREVPAISAAMRAYLATHSWPGN 361 Query: 364 VRELRNFADRWVLGVEQIATAGV----LPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQ 419 VREL +FA+R LGVE GV S +LPE++E++EA ++ AL G V + Sbjct: 362 VRELSHFAERVALGVE--GNLGVPAAAPASSGATLPERLERYEADILKQALTAHCGDVKE 419 Query: 420 AAERLGIPKKTLYDKIRKY 438 + LGIP+KT YDK++++ Sbjct: 420 TLQALGIPRKTFYDKLQRH 438 >PA1335 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Pae Pseudomonas aeruginosa Length = 425 Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/419 (54%), Positives = 292/419 (69%), Gaps = 3/419 (0%) Query: 25 QALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQVLAHVMHIDPDLPVIV 84 QALELE SAEEAL + RDF G++V+D+RLPG GL +L + +DP LPV++ Sbjct: 6 QALELEDIPCIGVGSAEEALQRVDRDFAGIVVSDIRLPGIDGLTLLERLKALDPSLPVVL 65 Query: 85 VTGHGDVSMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSLVLENRRLREAWAHDPE 144 +TGHGD+SMAV+AM AGAYDF+EKPF + L+E+A RA E+R L E LR A + Sbjct: 66 ITGHGDISMAVQAMHAGAYDFMEKPFSPERLVEVARRALEQRGLAREVSALRRQLAGRQD 125 Query: 145 LPP-LVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQLHAASGR-KGPFVAL 202 L ++G+SPAI+ +R LI ++G +VLI G+TG+GKE+VAR LH S R + FVAL Sbjct: 126 LAQRIIGRSPAIQALRELIANVGDTSANVLILGETGTGKELVARCLHDYSRRHQHAFVAL 185 Query: 203 NCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYANGGTLFLDEIESMPLALQVKLLRV 262 NCG LPE +F+SEIFGHEA AFTGA KRRIGK+E+ANGGTLFLDEIESMP+ LQ+KLLRV Sbjct: 186 NCGGLPENLFDSEIFGHEAHAFTGANKRRIGKIEHANGGTLFLDEIESMPVNLQIKLLRV 245 Query: 263 LQERRLERLGGNESVAIDCRVVAASKADLLKLSAEGQFREDLYYRIGVVSIDLPALNQRS 322 LQE LERLG N+S+ +DCRV+AA+KADL + GQFR DLYYR+ VVS++LPAL R Sbjct: 246 LQEHTLERLGSNQSIPVDCRVIAATKADLAAMGKSGQFRSDLYYRLNVVSLELPALRDRR 305 Query: 323 SDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQRDWPGNVRELRNFADRWVLGVEQIA 382 DI LL HF Q +++R+ R P A + DWPGNVRELRN A+R+ LG+ Sbjct: 306 EDILLLFEHFLQQSSLRFDRPAPELDRATVASLMAHDWPGNVRELRNVAERFALGLPVFN 365 Query: 383 TAG-VLPSPALSLPEQVEQFEAGLIAAALKDSEGSVAQAAERLGIPKKTLYDKIRKYQL 440 G + + E VE FE L+ AL G++ QA++ LG+ K TL+DK++KY L Sbjct: 366 KGGQAVQTGGPRFAEAVEAFEKALLGDALARHHGNLTQASQDLGMAKTTLFDKVKKYGL 424