BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0129.p (372 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all1846_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 130 5e-30 PA4117 [T] COG4251 Bacteriophytochrome (light-regulated signal t... 124 3e-28 mll2384_1 [T] COG0784 FOG Mlo Mesorhizobium loti 106 1e-22 all5210_5 [T] COG0642 Signal transduction histidine kinase Nos N... 93 1e-18 BH1809 [T] COG0642 Signal transduction histidine kinase Bha Baci... 92 2e-18 >all1846_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 152 Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/128 (53%), Positives = 86/128 (67%) Query: 11 PRVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHDVALAFLDVQMPDMD 70 P+V LLVDD ENLLAL A+L+R L+ A SG EAL LL D A+ LDVQMP MD Sbjct: 5 PKVNILLVDDKVENLLALEAILERLGANLVRATSGEEALRCLLHQDFAVILLDVQMPGMD 64 Query: 71 GFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRNKADVF 130 GFE A LIR R+R P+IF+TA ++ FKGY GAVD+L KPI+ +IL +K VF Sbjct: 65 GFETATLIRNRGRSRQTPIIFLTAFSTSDQMLFKGYALGAVDYLLKPIDANILTSKVTVF 124 Query: 131 FQLYRQKQ 138 +L+++ Q Sbjct: 125 VELFKKTQ 132 >PA4117 [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) Pae Pseudomonas aeruginosa Length = 728 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 139 LLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKEEVAQKASQQILNG 198 L+ L L E RM + +A+LGHDLRNPL ++ MAA LL + + + Q I Sbjct: 489 LMELCLNHAAEVDRMRQRLIAVLGHDLRNPLQSISMAAALLSSS--DTRTTELRQHISAS 546 Query: 199 GKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATYPGSVVERRIEGDD 258 RM +L+ +LD++R + G+ + + ++ ++V E YPG V+E I+ Sbjct: 547 SSRMERLVSQILDMSRLQSGIGLTVNPVDTDVSQLVRQIVCETDVAYPGLVIEIAIDPQV 606 Query: 259 NGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEEEVVMTIANRGV-IPAALLPV 317 D DR QV ANLL NA HG P+ + + R +EV +++ N + A L Sbjct: 607 RAVVDPDRYAQVAANLLSNARHHGLPGRPVLVTLT-RQGDEVCLSVLNETSGLSEAQLAN 665 Query: 318 IFDPFRGGEREVGR-KEGLGLGLFIAQQIVKSHGGSITMSSDDQVQTMVTVRLPRR 372 +F+PF+ + R + GLG+GL+I+Q I ++H G I + D V T +RLP R Sbjct: 666 LFEPFKRESADNQRNRNGLGIGLYISQAIAQAHQGRIDVDCRDDVITFC-LRLPVR 720 >mll2384_1 [T] COG0784 FOG Mlo Mesorhizobium loti Length = 227 Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 84/125 (67%), Gaps = 1/125 (0%) Query: 12 RVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHDVALAFLDVQMPDMDG 71 + + L VDD + NLLA+ +L E++ RSG EAL LL+ D A+ LDV MP +DG Sbjct: 23 KARVLAVDDDERNLLAIQEVLA-PIAEIVAVRSGEEALRCLLKQDFAVILLDVLMPGLDG 81 Query: 72 FELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRNKADVFF 131 +E A LIR E+++ PLIF+TA +++ +GY++GAVD+++KP +P +LR+K VF Sbjct: 82 YETAGLIRQREQSKRTPLIFLTAINKEDAHMLRGYDAGAVDYVFKPFDPVMLRSKVAVFV 141 Query: 132 QLYRQ 136 +L+ + Sbjct: 142 ELHEK 146 >all5210_5 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 251 Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 21/231 (9%) Query: 153 MNEMFVAILGHDLRNPLSAVVMAATLLQ-RTYKEEVAQKASQQILNGGKRMAKLIDNMLD 211 + + F+A+L H+LR PL+ ++ A LL+ RTYKEE ++ + I K +LID++LD Sbjct: 1 IKDEFLAVLSHELRTPLNPIMGWAKLLRTRTYKEETIKQGLETIERNAKLQTQLIDDLLD 60 Query: 212 LAR---ARLAGGIPLV--RASACLGEITERVVQEYQATYPGSVVER---RIEGDDNGYWD 263 ++R +L + LV R + G T R+ E ++ +++ ++ GD Sbjct: 61 VSRILRGKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIEIHTILSDEPVQVMGD------ 114 Query: 264 GDRLGQVVANLLGNALQHGAADSPICIGIDGRSEEEVVMTI-ANRGVIPAALLPVIFDPF 322 GDRL QV+ NL+ NA++ ++ + + ++ + + I +G+ P LP +F+ F Sbjct: 115 GDRLQQVIWNLVSNAVKFTPSEGRVDVRLEQVGRDAQIQVIDTGKGITP-EFLPYVFEYF 173 Query: 323 RGGEREVGRK-EGLGLGLFIAQQIVKSHGGSITMSS--DDQVQTMVTVRLP 370 R + + R GLGLGL I +V+ HGG++ S +DQ T TV+LP Sbjct: 174 RQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAESAGEDQGATF-TVKLP 223 >BH1809 [T] COG0642 Signal transduction histidine kinase Bha Bacillus halodurans Length = 351 Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 10/219 (4%) Query: 158 VAILGHDLRNPLSAVV--MAATLLQRTYKEEVAQKASQQILNGGKRMAKLIDNMLDLARA 215 V L HDLR PL++V+ + L ++ EE + +R+ +LID + ++ R Sbjct: 132 VVNLAHDLRTPLTSVIGYLDLILKEKDLTEEQVRHFLMIAFTKSQRLERLIDELFEITRM 191 Query: 216 RLAGGIPLVRASACLGEITERVVQEYQATYPGS--VVERRIEGDDNGYWDGDRLGQVVAN 273 G +P+ + + L ++ ++ +E + + + ++ DG+ L +V N Sbjct: 192 N-YGMLPVNKKNIDLSDLLLQLKEELYPLFEKNHLIARTNMKTPLPILGDGELLARVFEN 250 Query: 274 LLGNALQHGAADSPICIGIDGR-SEEEVVMTIANRG-VIPAALLPVIFDPFRGGEREVGR 331 LL NA ++G I I+G EEVV+ I N G IP LP +FD F G++ + Sbjct: 251 LLTNANRYGYDGK--FIDINGFIDSEEVVIQIVNYGDQIPPDELPHVFDMFYTGDKARTK 308 Query: 332 KEGLGLGLFIAQQIVKSHGGSITMSSDDQVQTMVTVRLP 370 + GLGLFIA+ IV+ HGG++T S ++T+ VRLP Sbjct: 309 DDSTGLGLFIAKNIVEQHGGTVTADS-SLIRTVFEVRLP 346