BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0120.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li... 181 9e-46 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 180 3e-45 Rv1033c [TK] COG0745 Response regulators consisting of a CheY-li... 172 4e-43 MT1062 [TK] COG0745 Response regulators consisting of a CheY-lik... 172 4e-43 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 170 3e-42 >RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 232 Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 144/225 (64%), Gaps = 10/225 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDAL-------SQRFNAAVLVLDIGLP 53 M +L+ EDD L DGL+R L G+ V +G A +Q ++ +L+LD+GLP Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYD--LLILDVGLP 58 Query: 54 GIDGFEVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKAL 113 + G EVL+R+R+ G PVL+LTA D++ +RV GL+LGADDY+ KPFA EL AR++AL Sbjct: 59 RLSGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRAL 118 Query: 114 IRRSAPQPAQLTVGG-LSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQII 172 +RR A L G L+ D + A I + ++LS RE +LE L+ A R+VSK+Q++ Sbjct: 119 VRRGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLV 178 Query: 173 DAVLPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 D + WGE+ + NA+EVYV R+R KI G+ I T+RG GY LE+ Sbjct: 179 DHLCGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCLER 223 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/221 (45%), Positives = 136/221 (61%), Gaps = 7/221 (3%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGID 56 M +LLVED P L + + + L G+TV + +G A S+ + A+ +LD+GLP +D Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEY--ALAILDVGLPRMD 58 Query: 57 GFEVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 GFEVL R+R G PVL+LTAR + DRVHGL LGADDYL KPF EL AR+KAL+RR Sbjct: 59 GFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRR 118 Query: 117 SAPQPAQLT-VGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 S QL G L D T+R +D + + L+ RE VLE ++ RV+SK+Q+ V Sbjct: 119 SVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQV 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLE 216 E+ + +A+E+YV R+R K+ V I T RG GY+LE Sbjct: 179 FGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLE 219 >Rv1033c [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mtu Mycobacterium tuberculosis H37Rv Length = 257 Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 145/228 (63%), Gaps = 11/228 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGF 58 + VLLV+D+P LT+ + L+ G+ V ++G +A+++ + VLVLDI LP +DG Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 E+LRR+R + TP L LTARD++ DRV GL GADDY+ KPF+ ELVAR++ L+RRS+ Sbjct: 92 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 151 Query: 119 ----PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDA 174 P L VG L+LD A++ DG I LS E+ +L +LM++ R +S+ +I+D Sbjct: 152 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211 Query: 175 VLPWGEDFT--INAVEVYVSRIRLKI-ADSGVVIRTIRGFGYMLEKSE 219 V W DF + V++Y+S +R KI +D +I T+RG GYML E Sbjct: 212 V--WNYDFAGRTSIVDLYISYLRKKIDSDREPMIHTVRGIGYMLRPPE 257 >MT1062 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain MtC Mycobacterium tuberculosis CDC1551 Length = 276 Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 145/228 (63%), Gaps = 11/228 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGF 58 + VLLV+D+P LT+ + L+ G+ V ++G +A+++ + VLVLDI LP +DG Sbjct: 51 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 110 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 E+LRR+R + TP L LTARD++ DRV GL GADDY+ KPF+ ELVAR++ L+RRS+ Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170 Query: 119 ----PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDA 174 P L VG L+LD A++ DG I LS E+ +L +LM++ R +S+ +I+D Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230 Query: 175 VLPWGEDFT--INAVEVYVSRIRLKI-ADSGVVIRTIRGFGYMLEKSE 219 V W DF + V++Y+S +R KI +D +I T+RG GYML E Sbjct: 231 V--WNYDFAGRTSIVDLYISYLRKKIDSDREPMIHTVRGIGYMLRPPE 276 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 143/220 (65%), Gaps = 3/220 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAA--VLVLDIGLPGIDGF 58 + +LLVED+ VL++GLS +L G+ V V++G A + + +++LD+ LP +DG Sbjct: 20 LRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 79 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 EVLR MR+ + VL+LTAR T ++V GL+LGADDY++KPF E AR++ L+RR+A Sbjct: 80 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 139 Query: 119 P-QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 + + L+ G + D ++ DGR +++ RE +LE L A +VV+K+ I+ ++ Sbjct: 140 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 199 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 + +D + NA+E YVSR+R ++A G+ ++T RG GY LEK Sbjct: 200 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYLEK 239