BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0091.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum        218   5e-57
PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa         215   3e-56
CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides         211   4e-55
mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti            199   3e-51
SMc00018 [L] COG0328 Ribonuclease HI Sme Sinorhizobium meliloti       196   2e-50

>RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum
          Length = 151

 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/141 (71%), Positives = 116/141 (82%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           M +V +YSDGACKGNPG GGWG +LV+GG EKE+FGGE  TTNNRMELMAVI+A  ALKR
Sbjct: 1   MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PC V V+TDSQYVQKGISEW+ GWKARGWKT+ K+PVKN DLW+ LD     H+V W WV
Sbjct: 61  PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120

Query: 132 RGHNGHSGNERADQLANRGVD 152
           +GH GH GNERAD LAN+GV+
Sbjct: 121 KGHAGHPGNERADALANKGVE 141


>PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa
          Length = 148

 Score =  215 bits (547), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 119/142 (83%)

Query: 13  DKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRP 72
           ++V IY+DGACKGNPGRGGWGALL+  G E+E++GGEP+TTNNRMELMA IQAL ALKR 
Sbjct: 5   EQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRS 64

Query: 73  CEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWVR 132
           C + + TDS+YV +GI+EW+  WK RGWKT+SK+PVKNADLWQALD    +HQVEW+WVR
Sbjct: 65  CPIRLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVR 124

Query: 133 GHNGHSGNERADQLANRGVDSI 154
           GH G  GNERADQLANRGV  +
Sbjct: 125 GHTGDPGNERADQLANRGVAEL 146


>CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides
          Length = 149

 Score =  211 bits (537), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 111/138 (80%)

Query: 14  KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 73
           KV IY+DGACKGNPG GGWGA+L  G K+KEI GGEP TTNNRMELMA IQAL  L RPC
Sbjct: 4   KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63

Query: 74  EVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWVRG 133
            V +HTDSQYV KGI EWI GWKARGWKT+ K PVKN DLW+ LDAA+ +H V+WRWV+G
Sbjct: 64  VVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123

Query: 134 HNGHSGNERADQLANRGV 151
           H GH  NERAD LAN G+
Sbjct: 124 HAGHPLNERADALANEGL 141


>mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti
          Length = 177

 Score =  199 bits (505), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 109/138 (78%)

Query: 14  KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 73
           +VEI++DGAC GNPG GGWGA+L   G  KE+ GGE  TTNNRMEL+A I ALNALK PC
Sbjct: 4   QVEIFTDGACSGNPGPGGWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALKEPC 63

Query: 74  EVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWVRG 133
            V +HTDS+YV  GIS+WIHGWK  GWKT+ K+PVKN +LWQALD A ++H+V W WV+G
Sbjct: 64  TVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANRRHKVTWNWVKG 123

Query: 134 HNGHSGNERADQLANRGV 151
           H GH+ NERAD+LA  G+
Sbjct: 124 HAGHTENERADELAREGM 141


>SMc00018 [L] COG0328 Ribonuclease HI Sme Sinorhizobium meliloti
          Length = 153

 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/143 (62%), Positives = 110/143 (76%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           M  V I++DGAC GNPG GGWGA+L  G  EKE+ GGE  TTNNRMEL+A I ALNAL++
Sbjct: 1   MKHVHIFTDGACSGNPGPGGWGAVLRYGDVEKEMSGGEAETTNNRMELLAAISALNALRQ 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PCEV +HTDS+YV  GIS+WIHGWK  GWKT  ++PVKN +LWQALD A+ +H V W WV
Sbjct: 61  PCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDEARNRHNVTWHWV 120

Query: 132 RGHNGHSGNERADQLANRGVDSI 154
           +GH GH  NERAD+LA +G++  
Sbjct: 121 KGHAGHPENERADELARKGMEPF 143