BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0085.p (351 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1175 [R] COG4239 ABC-type uncharacterized transport system, p... 448 e-126 PA1808 [R] COG4239 ABC-type uncharacterized transport system, pe... 370 e-102 STM2218 [R] COG4239 ABC-type uncharacterized transport system, p... 359 4e-99 VCA0589 [R] COG4239 ABC-type uncharacterized transport system, p... 358 1e-98 yejE [R] COG4239 ABC-type uncharacterized transport system, perm... 351 2e-96 >RSc1175 [R] COG4239 ABC-type uncharacterized transport system, permease component Rso Ralstonia solanacearum Length = 374 Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust. Identities = 232/348 (66%), Positives = 281/348 (80%), Gaps = 5/348 (1%) Query: 6 PATPSTP-----SISPSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASY 60 PA + P S SP +R W RF+ R GYWSL++F LF++SL +E +SND+PLV Y Sbjct: 11 PANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAISNDRPLVVKY 70 Query: 61 QGKLMFPMLKDYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAK 120 G+ FP++K Y + F GDF +P DYLDP+I +F GN+ +YP N Y Y TLNYFAK Sbjct: 71 HGQWYFPIVKTYPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPYSYETLNYFAK 130 Query: 121 EPNPAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAG 180 EPNPA PS+ENWLGTDDRGRDVFARLLYGFRVSVLFG+ALT IGV++G GA+ G+F G Sbjct: 131 EPNPAPPSAENWLGTDDRGRDVFARLLYGFRVSVLFGLALTLIGVLVGTLTGALMGFFGG 190 Query: 181 RTDLITQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNR 240 R DL++QRL+E+WGSMPELYLLIIF+SIF+PSLGLL+VLLSLFGWMSLS YVRA+F RNR Sbjct: 191 RFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSAYVRAEFYRNR 250 Query: 241 NLEYVQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPST 300 +L+YV++ARAMGL D II RH+LPNS+T ++TFLPF MSAAIL LTSLDFLGLGVPPS Sbjct: 251 SLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLDFLGLGVPPSM 310 Query: 301 PSLGELLAQGKNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALDVR 348 PSLGELLAQGK NLDAWWI+++TFV L + L+LLT +G+ LR+A D R Sbjct: 311 PSLGELLAQGKANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTR 358 >PA1808 [R] COG4239 ABC-type uncharacterized transport system, permease component Pae Pseudomonas aeruginosa Length = 339 Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/337 (53%), Positives = 243/337 (72%), Gaps = 1/337 (0%) Query: 14 ISP-SRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMFPMLKDY 72 +SP ++R W RF++++ G+WSL +F ILF+ SLGAEL++NDKPLV Y G FP+ K Y Sbjct: 3 LSPINQRRWARFKSNKRGWWSLWLFLILFVGSLGAELIANDKPLVVHYDGGWYFPVFKRY 62 Query: 73 SDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAAPSSENW 132 + FGG+F A+Y P+I Q + WV++P Y Y+T+NY K P PA PS+ENW Sbjct: 63 PETTFGGEFPLEANYKSPYISQLIAEKDGWVLWPPIPYSYDTINYELKVPAPAPPSAENW 122 Query: 133 LGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLITQRLLEI 192 LGTDD+ RDV AR++YGFRVS+LF + LT + ++GV GA+QGY+ G DL+ QR LE+ Sbjct: 123 LGTDDQARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEV 182 Query: 193 WGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQAARAMG 252 W +P LYLLII +S QP+ LL ++ LF WMSL D VRA+FLR RNLEYV+AARA+G Sbjct: 183 WSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALG 242 Query: 253 LPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQGKN 312 + + I++RH+LPN+M + +TF+PF ++ AI LTSLDFLG G+PP PSLGEL+AQGK+ Sbjct: 243 MRNSAIMFRHILPNAMISTLTFMPFILTGAIGTLTSLDFLGFGLPPGAPSLGELVAQGKS 302 Query: 313 NLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRR 349 NL A W+ ++ FVVL V L LL IG R+A D R+ Sbjct: 303 NLQAPWLGISAFVVLAVMLSLLVFIGEAARDAFDPRK 339 >STM2218 [R] COG4239 ABC-type uncharacterized transport system, permease component Sty Salmonella typhimurium LT2 Length = 341 Score = 359 bits (922), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 173/336 (51%), Positives = 242/336 (72%), Gaps = 2/336 (0%) Query: 12 PSISPSRRI-WLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMFPMLK 70 P +SP + W RFR +R GYWSL IF ++F +SL AEL++NDKPL+ Y+G+ FP++K Sbjct: 2 PRLSPVNQARWARFRHNRRGYWSLWIFLVVFSLSLCAELIANDKPLLVRYEGQWYFPLVK 61 Query: 71 DYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAAPSSE 130 +YS++ FGG + ADY DP++++Q G WV++ R+ NT+N+ +P P+ PS++ Sbjct: 62 NYSERDFGGPLATTADYQDPWLQRQLENRG-WVLWAPVRFSANTINFATTQPFPSPPSAK 120 Query: 131 NWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLITQRLL 190 NWLGTD G DVFAR+LYG R+S+LFG+ LT ++GV AGA+QGY+ G+ DL QRL+ Sbjct: 121 NWLGTDANGGDVFARILYGTRISILFGLMLTICSSVMGVLAGALQGYYGGKVDLWGQRLI 180 Query: 191 EIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQAARA 250 E+W MP L+L+I+ SS+ QP+ LL + LFGWMSL VRA+FLR RN +Y++AA+A Sbjct: 181 EVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQA 240 Query: 251 MGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQG 310 +G+ DR II RH+LPN+M +TFLPF + ++I LTSLDFLG G+P +PSLGELL QG Sbjct: 241 LGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQG 300 Query: 311 KNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALD 346 KNNL A W+ +A F+ + + L LL IG +R+A D Sbjct: 301 KNNLQAPWLGIAAFLSVAILLSLLIFIGEAVRDAFD 336 >VCA0589 [R] COG4239 ABC-type uncharacterized transport system, permease component Vch Vibrio cholerae Length = 352 Score = 358 bits (919), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 178/346 (51%), Positives = 240/346 (69%), Gaps = 3/346 (0%) Query: 1 MSMTTPATPSTPSISPSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASY 60 M MT + ++ +R W RF+A+R G+WSL IF +LF+VSL AEL++NDKPL+ Y Sbjct: 2 MGMTKASKRVPNPLTEAR--WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQY 59 Query: 61 QGKLMFPMLKDYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAK 120 G P+++ YS+ FGG+FD+ ADY DP++ + G +I+PL R+ Y+T+N+ Sbjct: 60 DGAWYMPIVQRYSETQFGGEFDTEADYTDPYVVSLIEEKGQ-IIWPLIRFHYDTINFDIT 118 Query: 121 EPNPAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAG 180 P+AP S NWLGTDD+GRDV AR++YGFR+SVLFG LT I ++GV GA QGY+ G Sbjct: 119 GSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGG 178 Query: 181 RTDLITQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNR 240 DL QR +E+W MP L+LLII SS +P+ LL ++ LF WMSL VRA+FLR R Sbjct: 179 WLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCR 238 Query: 241 NLEYVQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPST 300 N +YV+AA+AMG+ D II RH+LPN+M +T +PF +S ++ LTSLDFLG G+P + Sbjct: 239 NFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGS 298 Query: 301 PSLGELLAQGKNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALD 346 PSLGELLAQGK NL A W+ ++ FVVL+V L LL IG +R+A D Sbjct: 299 PSLGELLAQGKANLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFD 344 >yejE [R] COG4239 ABC-type uncharacterized transport system, permease component Eco Escherichia coli K12 Length = 341 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 169/326 (51%), Positives = 231/326 (70%), Gaps = 1/326 (0%) Query: 21 WLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMFPMLKDYSDKHFGGD 80 W RFR +R GYWSL IF +LF +SL +EL++NDKPL+ Y G FP+LK+YS+ FGG Sbjct: 12 WARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLLKNYSESDFGGP 71 Query: 81 FDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAAPSSENWLGTDDRGR 140 S ADY DP+++Q+ +G WV++ R+G ++N+ +P P+ PS +NWLGTD G Sbjct: 72 LASQADYQDPWLKQRLENNG-WVLWAPIRFGATSINFATNKPFPSPPSRQNWLGTDANGG 130 Query: 141 DVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLITQRLLEIWGSMPELY 200 DV AR+LYG R+SVLFG+ LT ++GV AGA+QGY+ G+ DL QR +E+W MP L+ Sbjct: 131 DVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLF 190 Query: 201 LLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQAARAMGLPDRLIIW 260 L+I+ SS+ QP+ LL + LFGWMSL VRA+FLR RN +Y++AA+A+G+ DR II Sbjct: 191 LIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIIL 250 Query: 261 RHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAWWIA 320 RH+LPN+M +TFLPF + ++I LTSLDFLG G+P +PSLGELL QGKNNL A W+ Sbjct: 251 RHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLG 310 Query: 321 VATFVVLTVTLLLLTNIGNGLRNALD 346 + F+ + + L LL IG +R+A D Sbjct: 311 ITAFLSVAILLSLLIFIGEAVRDAFD 336