BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0083.p (614 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1173 [E] COG4166 ABC-type oligopeptide transport system, peri... 690 0.0 PA2058 [E] COG4166 ABC-type oligopeptide transport system, perip... 484 e-136 PA1810 [E] COG4166 ABC-type oligopeptide transport system, perip... 476 e-134 jhp1173 [E] COG4166 ABC-type oligopeptide transport system, peri... 432 e-121 HP1252 [E] COG4166 ABC-type oligopeptide transport system, perip... 422 e-117 >RSc1173 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 625 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/590 (57%), Positives = 420/590 (71%), Gaps = 20/590 (3%) Query: 37 AFSLYDTPKYGPGFTHFDYVNPDAPRRGTLYLANPDRRTSFDKFNPMSMKGVAAANVDQL 96 ++ Y KY GFTHF Y+NP AP GTL L NPDRRTSFDKFNP ++KG AA ++ L Sbjct: 32 GYAEYGDLKYPAGFTHFAYLNPKAPIGGTLALGNPDRRTSFDKFNPYTIKGTAAPGLNAL 91 Query: 97 MFETLAVSSGDEVATVYGLLADDMKLAADRMSMTFHLNPKARFNNGDKVTAEDVKYSFDT 156 +FE+L + S DE A+ YGLLADD+ +A D +S+TFHLNP ARF+NGD V A DVKYS+D Sbjct: 92 VFESLLIGSWDETASGYGLLADDVSVAPDELSVTFHLNPLARFSNGDPVRAADVKYSYDM 151 Query: 157 LIAKGA-PQYKSIFADVKGCVVVDAATVRFDFASNNHELPLIVSSVPVFSKKWAQG---- 211 L+ KGA P Y+S+ ADV V+D T+R+DF N ELPLIV ++PVFS KW +G Sbjct: 152 LMGKGASPAYRSMTADVSKVTVMDERTIRYDFKRRNKELPLIVGNLPVFSPKWGKGSGKP 211 Query: 212 --------TPFDQIQLTPPISTGPYLIESYDTGRSIIYKRNPDYWGKDVPARRGMFNFER 263 TPFD+I PI +GPYLIE YD R I ++RNPDYWG+++ RRG +NFE Sbjct: 212 DDPEGGKDTPFDKITFQEPIGSGPYLIERYDGARGITFRRNPDYWGRNLNVRRGAYNFEH 271 Query: 264 IVYRFYKDDLARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRIVKKEFKHSNGAGMQ 323 I Y+ YKD+ ARLEAFKAGE+D +VEY AKNWA+SY G +FR G +VK EF H NGAGMQ Sbjct: 272 IQYKLYKDETARLEAFKAGEYDAMVEYRAKNWAKSYVGVKFRSGELVKSEFPHRNGAGMQ 331 Query: 324 GFVMNLRRDQFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFNNSQLAA----TGEP 379 GFVMNLR+ F+D+RVR+A+ LALD+EW+NRQ FYG Y R+ S+F NS+LAA TG+P Sbjct: 332 GFVMNLRKPIFRDLRVRRALVLALDFEWLNRQQFYGAYRRLDSYFANSELAASDSVTGQP 391 Query: 380 QGDELALLKSLQAKGLKVDPAVFGPAPVPPSTNPPSSLRANLRLARELLAQAGWVYRDGA 439 ELALL+ L+ K +D VFG PPST+PP SLR NLR AR LLAQAGW Y DGA Sbjct: 392 GKGELALLEPLRGK---LDAEVFGVLQAPPSTDPPGSLRDNLRQARRLLAQAGWTYSDGA 448 Query: 440 VRNAHGVPLSFEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAKRMEDFDFDMT 499 +RN G P +FE+LDD +MSRV++ + RNL LGI V QR DYAL KR+E+FDFDM Sbjct: 449 LRNTKGEPFTFEMLDDGGAMSRVMAAYVRNLEKLGIRVNQRITDYALYQKRLEEFDFDMI 508 Query: 500 SVRFPDTSSPGNELFDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVVAADTRVKLTAAAR 559 S+RFPD+SSPGNEL D FGS AADE+GS+N GLK P VD L+ V+ A R +L A+R Sbjct: 509 SLRFPDSSSPGNELKDRFGSAAADEQGSDNLIGLKSPAVDALIDDVLRAGNREELVTASR 568 Query: 560 ALDRVLLHKYIVVPHWYSSTHRIAYQNRFGIPAVAPLYYQADPYVIGTWW 609 ALDRVL+ V+PHWY+ THR+AY P P YY A+ +V+ WW Sbjct: 569 ALDRVLMQGCYVIPHWYAPTHRVAYNRNLMYPDRLPYYYSAEGWVLTAWW 618 >PA2058 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 602 Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust. Identities = 259/605 (42%), Positives = 365/605 (60%), Gaps = 22/605 (3%) Query: 16 IFLSCLLAAALAHGIPAAAEPAFSLYDTP-KYGPGFTHFDYVNPDAPRRGTLYLANPDRR 74 + +C L A+LA P A +LYD P KY PGF HFD+V+P AP+ G+L RR Sbjct: 6 LVFACCLLASLARSEP---RHAITLYDEPAKYPPGFQHFDFVDPQAPKGGSL------RR 56 Query: 75 T---SFDKFNPMSMKGVAAANVDQ-LMFETLAVSSGDEVATVYGLLADDMKLAADRMSMT 130 SFD NP + +G + L++ETL S DE T YG LA ++ A D + Sbjct: 57 MESGSFDTLNPFANRGTPISMTQAALIYETLGFQSLDEPFTEYGYLARYIEKAPDNSWVR 116 Query: 131 FHLNPKARFNNGDKVTAEDVKYSFDTLIAKGAPQYKSIFADVKGCVVVDAATVRFDF-AS 189 FH++P+ARF++G VTAEDVK+SFD+L+ +G+P +++ + +V+ VV D +RFDF + Sbjct: 117 FHIDPRARFSDGVAVTAEDVKFSFDSLVEQGSPFWRAYYKEVREPVVEDRLRIRFDFRHA 176 Query: 190 NNHELPLIVSSVPVFSKKWAQGTPFDQIQLTPPISTGPYLIESYDTGRSIIYKRNPDYWG 249 N ELPL+++ + V + W QG F++ + PP+ +GPY +E + GRS+ Y+RNPD+W Sbjct: 177 GNRELPLVLAQLYVLPRHWWQGRDFNRSSMQPPLGSGPYRLEKAEAGRSVSYRRNPDWWA 236 Query: 250 KDVPARRGMFNFERIVYRFYKDDLARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRI 309 +D+P RG++NFERI + +Y+D L+AFKAG+ D+ VE S K W+ Y P RDGR+ Sbjct: 237 RDLPVGRGLYNFERIRFDYYRDSGVALQAFKAGQADINVETSVKAWSSGYDSPALRDGRL 296 Query: 310 VKKEFKHSNGAGMQGFVMNLRRDQFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFN 369 ++ F + A +QG V NLRR F+D RVRQA+ L D+EW NRQLF G+Y R+ S+F+ Sbjct: 297 RQESFPYPYPASLQGLVFNLRRPLFEDRRVRQALSLLFDFEWTNRQLFGGRYKRLRSYFD 356 Query: 370 NSQLAATGEPQGDELALLKSLQAKGLKVDPAVFGPAPVPPSTNPPSSLRANLRLARELLA 429 NS++AA G P DELALL+ L+ ++ VFG A PP + + L A LL Sbjct: 357 NSEMAARGLPGADELALLEPLRG---QIPEEVFGQAYAPPVNDGSGDIHERLVQAYRLLG 413 Query: 430 QAGWVYRDGAVRNAHGVPLSFEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAK 489 +AGW DG + + G PL F++L S+ R + F RNL +GID+ R D + + Sbjct: 414 EAGWHAVDGRLLDTAGRPLRFDLLLQGKSLERALLPFQRNLARIGIDMRLRQVDASQYIE 473 Query: 490 RMEDFDFDMTSVRFPDTSSPGNELFDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVVAAD 549 R+ D+DM F ++SPGNE + + S + + G N GLKDP +D+LVQ VV AD Sbjct: 474 RIRARDYDMIVSSFSQSNSPGNEQYSFWHSSSYADPGGYNRIGLKDPAIDRLVQAVVEAD 533 Query: 550 TRVKLTAAARALDRVLLHKYIVVPHWYSSTHRIAYQNRFGIPAVAPLYYQADPYVIGTWW 609 +R L A RALDRVL Y ++P WYS IA NRFG P AP Y + TWW Sbjct: 534 SRAALETAVRALDRVLQWGYYLIPTWYSDEVWIASWNRFGRPPQAPRYSLG----LNTWW 589 Query: 610 EEKAR 614 E + R Sbjct: 590 EVRER 594 >PA1810 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Pae Pseudomonas aeruginosa Length = 615 Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust. Identities = 259/581 (44%), Positives = 351/581 (60%), Gaps = 13/581 (2%) Query: 32 AAAEPAFSLYDTP-KYGPGFTHFDYVNPDAPRRGTLYLANPDRRTSFDKFNPMSMKGVAA 90 AA + A +LYD P KY F HFDYVNPDAP+ G L A+ FD NP KGV+A Sbjct: 23 AAPKHALTLYDEPPKYPADFKHFDYVNPDAPKGGILRQAD---FGGFDSLNPFIGKGVSA 79 Query: 91 ANVDQLMFETLAVSSGDEVATVYGLLADDMKLAADRMSMTFHLNPKARFNNGDKVTAEDV 150 ++ L+++TLA S DE T YGLLA+ ++ A D + F+L P+ARF++G VTAEDV Sbjct: 80 PSLG-LIYDTLAFQSQDEPFTEYGLLAEKIEKAPDNSYVRFYLRPQARFSDGTPVTAEDV 138 Query: 151 KYSFDTLIAKGAPQYKSIFADVKGCVVVDAATVRFDFA-SNNHELPLIVSSVPVFSKKWA 209 ++F+TL++KG P Y++ +ADV V D VRFDF + N ELPLI+ + + K W Sbjct: 139 VFTFETLVSKGDPMYRNYYADVDKVVAEDKLRVRFDFKHAGNRELPLILGQIAILPKHWW 198 Query: 210 QGTPFDQIQLTPPISTGPYLIESYDTGRSIIYKRNPDYWGKDVPARRGMFNFERIVYRFY 269 F + + P+ +GPY I D GRSI Y+R D+W KD+P RG++NF+ I Y Sbjct: 199 ADRDFSKTGMEIPVGSGPYRIAKVDPGRSISYERVKDWWAKDLPVSRGLYNFDTITIDSY 258 Query: 270 KDDLARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRIVKKEFKHSNGAGMQGFVMNL 329 +D LEAFKAG++DV +EYSAK+WA Y P RDGR +K + N GMQGF N+ Sbjct: 259 RDMSVALEAFKAGQYDVNLEYSAKDWATGYESPALRDGRFIKASIHNHNPVGMQGFAFNI 318 Query: 330 RRDQFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFNNSQLAATGEPQGDELALLKS 389 RR F+D RVRQAI L D+EW N+QLF+ Y R S+F NS++AA P EL +L+ Sbjct: 319 RRPVFQDRRVRQAISLLFDFEWSNKQLFFSSYKRTNSYFENSEMAAHQLPSEAELKILEP 378 Query: 390 LQAKGLKVDPAVFGPAPVPPSTNPPSSLRANLRLARELLAQAGWVYRDGAVRNAHGVPLS 449 L+ K+ F P + +R R A +LL +AG+ + + G PLS Sbjct: 379 LRG---KIPDEAFDQVFQNPVNDGSGVIREQRRKAYQLLTEAGYRIENNRMVGPDGQPLS 435 Query: 450 FEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAKRMEDFDFDMTSVRFPDTSSP 509 FE + Q++M RVI F RNL LGID+ R D + R+ DFDMTS +P ++SP Sbjct: 436 FEFMLFQANMERVILPFKRNLAELGIDMQIRRVDVSQFVNRLRSRDFDMTSATWPQSNSP 495 Query: 510 GNELFDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVVAADTRVKLTAAARALDRVLLHKY 569 GNE + + S +AD+ GS N GLKDP +D LV++++ +D+R L RALDRVL Y Sbjct: 496 GNEQREFWHSSSADKAGSRNFIGLKDPAIDSLVESLIQSDSRQSLIDHTRALDRVLSWGY 555 Query: 570 IVVPHWYSSTHRIAYQNRFGIPAVAPLYYQADPYVIGTWWE 610 VVP++Y T R+AY NRFG P V PLY + + TWW+ Sbjct: 556 YVVPNYYVDTWRVAYWNRFGRPKVTPLY----DWGLMTWWQ 592 >jhp1173 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component jHp Helicobacter pylori J99 Length = 595 Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/586 (39%), Positives = 347/586 (59%), Gaps = 16/586 (2%) Query: 34 AEPAFSLYDTPKYGPGFTHFDYVNPDAPRRGTLYLANPDRRTSFDKFNPMSMKGVAAANV 93 A P L + PKY FTHF+Y NP+A + G L D +FD NP ++KG A + Sbjct: 18 ATPYLYLGEEPKYKDNFTHFEYANPNARKGGVL---RNDAIGTFDSLNPFALKGTKAEGL 74 Query: 94 DQLMFETLAVSSGDEVATVYGLLADDMKLAADRMSMTFHLNPKARFNNGDKVTAEDVKYS 153 D L+++TL V S DE Y L+A D ++A D + F L+ +ARF+N + A DVK+S Sbjct: 75 D-LIYDTLMVQSLDEPFAEYPLIAKDAEVAKDNSYVIFTLDKRARFSNNAPILASDVKFS 133 Query: 154 FDTLIAKGAPQYKSIFADVKGCVVVDAATVRFDF-ASNNHELPLIVSSVPVFSKKWAQGT 212 FDT++ G+P Y+ + DVK V++D V+F F + N ELPLI+ + +FSKK Q Sbjct: 134 FDTIMKLGSPLYRQYYQDVKKAVILDKHHVKFIFKTTENKELPLILGQLQIFSKKAFQKD 193 Query: 213 PFDQIQLTPPISTGPYLIESYDTGRSIIYKRNPDYWGKDVPARRGMFNFERIVYRFYKDD 272 F++ L P+S+GPY+I S+D G+ I Y+RNP+YW K++P+R+G FNF++I + +YKD+ Sbjct: 194 YFEKNPLLIPVSSGPYVIASFDVGKKITYQRNPNYWAKNLPSRKGQFNFDQIKFEYYKDE 253 Query: 273 LARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRIVKKEFKHSNGAGMQGFVMNLRRD 332 L+AF +G +D +E +AK WAR Y G + +I K H +GMQGF N RR+ Sbjct: 254 TVALQAFLSGAYDWRLESTAKVWARGYVGKAMDNKKITKYLIAHKMPSGMQGFFFNTRRE 313 Query: 333 QFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFNNSQLAATGEPQGDELALLKSLQA 392 FKD RVR+A+ A D+EW N+ LF+ QY R SFF+NS A+ P +E ALL + Sbjct: 314 IFKDKRVREALFYAFDFEWANKNLFFSQYKRTTSFFSNSIYASPPLPSPEEKALLAPYEK 373 Query: 393 KGLKVDPAVFGPAPVPPSTNPPS----SLRANLRLARELLAQAGWVYRDGAVRNAHGVPL 448 +D VF + P T+ P +LR NL+ A++LL AG+ Y++ + + + P Sbjct: 374 ---SLDERVFKEPYIVPRTDGPDVLGYNLRENLKYAQKLLESAGFSYKNMRLVDKNNKPF 430 Query: 449 SFEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAKRMEDFDFDMTSVRFPDTSS 508 SF +L + + R+ FA+NLR LGI++ + D + R++ +DFDM +S Sbjct: 431 SFTLLLNSPAFERLALAFAKNLRVLGIEMKIQRVDLSQYVNRIKSYDFDMIVGVIGQSSF 490 Query: 509 PGNELFDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVVAADTRVKLTAAARALDRVLLHK 568 PGNE FGS +A EKG+ N G+ VD L++ ++ A + AA +A+DRVLL Sbjct: 491 PGNEQRFYFGSLSAKEKGTRNYAGISSKAVDDLIEKIINAKDYKEQLAAIQAMDRVLLWG 550 Query: 569 YIVVPHWYSSTHRIAYQNRFGIPAVAPLYYQADPYVIGTWWEEKAR 614 + V+PH+Y +RIA N G+P ++P Y PY+ WW +K R Sbjct: 551 FYVIPHFYLPNYRIAAYNYIGMPEISPS-YGFSPYL---WWIKKER 592 >HP1252 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Hpy Helicobacter pylori 26695 Length = 594 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 230/581 (39%), Positives = 341/581 (58%), Gaps = 16/581 (2%) Query: 34 AEPAFSLYDTPKYGPGFTHFDYVNPDAPRRGTLYLANPDRRTSFDKFNPMSMKGVAAANV 93 A P L + PKY FTHF+Y NP+A + G L D +FD NP ++KG A + Sbjct: 18 ATPYLYLGEEPKYKDNFTHFEYANPNAKKGGVL---RNDAIGTFDSLNPFALKGTKAEGL 74 Query: 94 DQLMFETLAVSSGDEVATVYGLLADDMKLAADRMSMTFHLNPKARFNNGDKVTAEDVKYS 153 D L+++TL V S DE Y L+A D ++A D + F ++ +ARF+N + A DVK+S Sbjct: 75 D-LIYDTLMVQSLDEPFAEYPLIAKDAEVAKDNSYVIFTIDKRARFSNNAPILASDVKFS 133 Query: 154 FDTLIAKGAPQYKSIFADVKGCVVVDAATVRFDF-ASNNHELPLIVSSVPVFSKKWAQGT 212 FDT++ G+P Y+ + DVK VV+D V+F F + N ELPLI+ + +FSKK Q Sbjct: 134 FDTIMKLGSPIYRQYYQDVKKAVVLDKHHVKFIFKTTENKELPLILGQLQIFSKKAFQED 193 Query: 213 PFDQIQLTPPISTGPYLIESYDTGRSIIYKRNPDYWGKDVPARRGMFNFERIVYRFYKDD 272 F++ L P+S+GPY+I S+D G+ I Y+RNP+YW +++P+R+G FNF++I + +YKD+ Sbjct: 194 YFEKNPLLIPVSSGPYVIASFDVGKKITYQRNPNYWARNLPSRKGQFNFDQIKFEYYKDE 253 Query: 273 LARLEAFKAGEFDVVVEYSAKNWARSYTGPQFRDGRIVKKEFKHSNGAGMQGFVMNLRRD 332 L+AF +G +D +E +AK WAR Y G + I K H +GMQGF N RR+ Sbjct: 254 TIALQAFLSGAYDWRLESTAKVWARGYVGKAMDNKEITKYLIAHKMPSGMQGFFFNTRRE 313 Query: 333 QFKDVRVRQAIGLALDYEWMNRQLFYGQYTRIYSFFNNSQLAATGEPQGDELALLKSLQA 392 FKD RVR+A+ A D+EW N+ LF+ QY R SFF+NS A+ P +E ALL + Sbjct: 314 IFKDKRVREALFYAFDFEWANKNLFFSQYKRTTSFFSNSIYASPPLPSPEEKALLAPYEK 373 Query: 393 KGLKVDPAVFGPAPVPPSTNPPS----SLRANLRLARELLAQAGWVYRDGAVRNAHGVPL 448 +D VF V P T+ +LR NL+ A++LL G+ Y++ + + + P Sbjct: 374 ---SLDERVFKEPYVVPRTDGVDVLGYNLRENLKYAQKLLESTGFSYKNMRLVDKNNKPF 430 Query: 449 SFEILDDQSSMSRVISVFARNLRTLGIDVVQRSADYALVAKRMEDFDFDMTSVRFPDTSS 508 SF +L + + R+ FA+NLR LGI++ + D + R++ +DFDM +S Sbjct: 431 SFTLLLNSPAFERLALAFAKNLRVLGIEMKIQRVDLSQYVNRIKSYDFDMIVGVIGQSSF 490 Query: 509 PGNELFDMFGSRAADEKGSNNAWGLKDPVVDQLVQTVVAADTRVKLTAAARALDRVLLHK 568 PGNE FGS +A EKG+ N G+ VD L++ ++ A + AA +A+DRVLL Sbjct: 491 PGNEQRFYFGSLSAKEKGTRNYAGISSKAVDDLIEKIINAKDYKEQLAAIQAMDRVLLWG 550 Query: 569 YIVVPHWYSSTHRIAYQNRFGIPAVAPLYYQADPYVIGTWW 609 + V+PH+Y +RIA N G+P ++P Y PY+ WW Sbjct: 551 FYVIPHFYLPNYRIAAYNYIGMPEISPS-YGFSPYL---WW 587