BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0074.p (520 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 389 e-107 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 323 6e-88 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 312 1e-84 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 311 2e-84 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 304 3e-82 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 220/469 (46%), Positives = 301/469 (64%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 MR +++ I RL F+ ++ ++ I + + RL D N + +V++RY I + N I Sbjct: 1 MRISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKN 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 L N L +T P Q + + N + Y L +L+T + +A F + + Sbjct: 61 NGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFD 120 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 R +Y A ++ L A L M LQ +Y+ +D + D Q M+ V++ Sbjct: 121 ARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSE 180 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 A + M+V VLA L A I+R+ITRP++ A+ +AE VA G+LT +++ Sbjct: 181 AAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVD 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 + DE GRLL AL M + L IV +VR GTD++ AS+++A+GN+DLSSRTE+QAS+LEE Sbjct: 241 TQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TA+++EQLTS+VKQNAD+ +++S LA NA+ VA +GG AV + +QTM IN SSRKIVDI Sbjct: 301 TAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIK LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDS 420 Query: 421 VGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 VG V+ GT V +AG + +VV I+ V++IV EISA++REQSDGIEQ+ Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQI 469 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 323 bits (828), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 177/331 (53%), Positives = 236/331 (71%) Query: 139 GEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVADAEVTYTITRNIMLVSGVL 198 G+ + + ++E M L + ++ LS MQ ++ S + + + ++ Sbjct: 139 GDAERTSQTVMEAMPALYRPLGDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLV 198 Query: 199 AALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAHSTDETGRLLQALAAMNQK 258 + + W++ RSIT PL+RA+E AE + GDLT I DETGR+L AL M + Sbjct: 199 GIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQES 258 Query: 259 LKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASSLEQLTSSVKQNADH 318 L+ +V +VR G+D++ +A+ QIA GN DLS RTE+QAS+LEETASS+EQLT VKQNAD Sbjct: 259 LQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADS 318 Query: 319 TRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIISVIDGIAFQTNILALNA 378 R++S LA NA+ +A +GG+ V +VV+TM I+DSSRKI DII VI+GIAFQTNILALNA Sbjct: 319 ARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNA 378 Query: 379 AVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVGQVTAGTELVAQAGSTM 438 AVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIK LI+DSVG+V +GT LVA+AG+ + Sbjct: 379 AVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVI 438 Query: 439 DEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 DEVV ++++V+ I+GEISAA+ QS+GI QV Sbjct: 439 DEVVVAVKRVTGIMGEISAASDAQSEGIAQV 469 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 312 bits (799), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 207/477 (43%), Positives = 296/477 (62%), Gaps = 24/477 (5%) Query: 6 LNISTRLAIGFSALIVVIAAIVTLSLARLGDI--NESLELVVNDRYKKINIVNAISGKVD 63 L+I RLA+ L V +A + L L +G++ N +L+ ++ + K+ Sbjct: 4 LSIKARLALVLFVLAVFLAGVGALGL--VGNLRSNAALKETYSNNLASTRALGLAEAKLA 61 Query: 64 DVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRL-ITNPE-----ARAKFDK 117 +L +F TDPA+ + I+ + K + E L + PE AK + Sbjct: 62 QARTALDRAIFETDPAKTTDAISRIQAQIGNSEKAWAEYLNLPFSTPEEEKVAGEAKKQR 121 Query: 118 VTETRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKS 177 + + AA + + R G+KD A +L +E++ + Y Q D L+ +Q ++ S Sbjct: 122 DLIIKDNIAAAVEALKR----GDKDAARQLAVEQIPYNFRTYASQSDRLNAIQTEV---S 174 Query: 178 VADAEVTYTITRN-----IMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGD 232 A E + + + +++++ LA ++ +SR+I+ PL+ + +A+G+ Sbjct: 175 AALYEASQSFFKGLVWTFVIVIAAGLALAAGCYL--ILSRAISLPLAEMLVHFREIASGN 232 Query: 233 LTAVIDAHSTDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTE 292 LT + S DE G L++ L M KLKA VL VR G++S+ +A+ QIA GN +LS RTE Sbjct: 233 LTTDVRVRSRDEMGVLMEGLQQMQDKLKATVLTVRHGSESIASATQQIAAGNTNLSQRTE 292 Query: 293 EQASALEETASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAIND 352 EQAS+LEETASS+E+LTS VKQNAD+ R++S LA NA+ +A QGG V+ VV TM I++ Sbjct: 293 EQASSLEETASSMEELTSIVKQNADNARQASTLAENASGIAMQGGAVVQDVVTTMAQISE 352 Query: 353 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKE 412 SSRKI DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AAKE Sbjct: 353 SSRKITDIIAVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAGAAKE 412 Query: 413 IKELINDSVGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 IK LI DS +V +G+ LVA+AG TMDE+V ++++V+ I+GEISA + EQS GIEQ+ Sbjct: 413 IKSLIEDSATRVESGSSLVARAGKTMDEIVVAVKRVTDIMGEISAGSAEQSTGIEQI 469 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 311 bits (798), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 167/264 (63%), Positives = 211/264 (79%), Gaps = 4/264 (1%) Query: 210 ISRSITRPLSRAVEVAETVAAGDLTAVID----AHSTDETGRLLQALAAMNQKLKAIVLE 265 + R++ RPL RA+ V E +AAGDL +D A DET RL+ A+A+M L+ +V + Sbjct: 214 LGRTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVGQ 273 Query: 266 VRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASSLEQLTSSVKQNADHTRKSSEL 325 VR G+DS+ +A+ QIA GN DLS RTE+QAS+LEETASS+E+LTS VKQNAD+ R++S L Sbjct: 274 VRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTL 333 Query: 326 AGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARA 385 A NA+ VA +GG+ V +VV+TM IN SS+KI DII VI+GIAFQTNILALNAAVEAARA Sbjct: 334 AVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAARA 393 Query: 386 GEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVGQVTAGTELVAQAGSTMDEVVQSI 445 GEQGRGFAVVA EVR LAQRSA AAKEIKELI+DSV +V G++LVA+AG+ +DEVV ++ Sbjct: 394 GEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVAV 453 Query: 446 EQVSHIVGEISAATREQSDGIEQV 469 ++V+ I+GEISAA+ EQS GIEQV Sbjct: 454 KRVTDIMGEISAASDEQSSGIEQV 477 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 304 bits (779), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/277 (60%), Positives = 214/277 (77%), Gaps = 3/277 (1%) Query: 193 LVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAHSTDETGRLLQAL 252 +V G+L+A+ AF + R+I+ PLSR + ++ G+LT I S DE G L + L Sbjct: 196 IVVGILSAVACAF---GLDRAISVPLSRMLGSFGEISRGNLTEQIVVTSQDEMGALTRGL 252 Query: 253 AAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASSLEQLTSSV 312 M + L + +R G+DS+ +A+ QIA GN+DLS RTEEQAS+LEETASS+E+LTS V Sbjct: 253 QDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSLEETASSMEELTSIV 312 Query: 313 KQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIISVIDGIAFQTN 372 KQNAD+ R++S LA NA+ +A +GG+ V +VV+TM INDSS+KI DII VI+GIAFQTN Sbjct: 313 KQNADNARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTN 372 Query: 373 ILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVGQVTAGTELVA 432 ILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIKELI+DSVG+V GT LVA Sbjct: 373 ILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGTTLVA 432 Query: 433 QAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 +AG+ +DEVV ++++V+ I+GEISAA+ EQS GIEQV Sbjct: 433 EAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQV 469