BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0027.p         (336 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein St...   201   1e-51
RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rs...   182   8e-46
RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum                  167   3e-41
STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2              165   2e-40
PA3349_2 [T] COG0784 FOG Pae Pseudomonas aeruginosa                   105   1e-22

>STM2314_1 [NT] COG0835 Chemotaxis signal transduction protein Sty Salmonella
           typhimurium LT2
          Length = 189

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 127/190 (66%), Gaps = 2/190 (1%)

Query: 17  MDNFQKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAA 76
           MDNFQK+ID+R NLT +N+FELLLFR+GT     ++  EL+GINVFK+REIVPM   T  
Sbjct: 1   MDNFQKDIDDRANLTLSNRFELLLFRLGT--SLHEQKSELFGINVFKLREIVPMPAFTRP 58

Query: 77  AGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVR 136
           AGM +P+LGMVNIR QV+ V+DL AV GC+   GLNILLITE+AR  QAFAVESVE I+R
Sbjct: 59  AGMKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYARSVQAFAVESVENIMR 118

Query: 137 LDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKESIEPNKGGV 196
           LDW QV  A+    G  +TSIA +D  ++   L  VLDVE IL  + P    +       
Sbjct: 119 LDWQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQILYDIVPSSHDLRATNLKT 178

Query: 197 RPVTLKPGTV 206
               + PG V
Sbjct: 179 NKFYITPGAV 188


>RSp0598_1 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 166

 Score =  182 bits (463), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 120/168 (71%), Gaps = 4/168 (2%)

Query: 21  QKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAAAGMT 80
           Q+E+DERTNLT+ N+FELLLFR+G    S     EL+GINVFK+REI+ M P+T  A   
Sbjct: 3   QQEVDERTNLTNNNRFELLLFRLGESQRSQR---ELFGINVFKVREIMVMPPVTHVADAG 59

Query: 81  SPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVRLDWS 140
           + +LG VN+RGQ++ V+DL++V GC+     NILLITE+AR TQ FAVE V+EIVRL+WS
Sbjct: 60  AHILGAVNVRGQIIPVIDLASVIGCKNGNA-NILLITEYARSTQGFAVEEVDEIVRLEWS 118

Query: 141 QVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKES 188
           Q+ PA+A      +TS+AR+D   D  RL QV+DVE IL  V P + +
Sbjct: 119 QIFPAEASVGSANITSLARLDGNADNSRLAQVIDVEQILVDVFPTRRA 166


>RSp0598_2 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 147

 Score =  167 bits (424), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 189 IEPNKGGVRPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLS 248
           + P+  G R + L PG  +L ADDS +AR+LI   L+ +  PF+M   G +AW+ LQ ++
Sbjct: 2   LAPDSDG-RAIKLPPGAKLLVADDSGLARSLIANGLEAMGAPFVMTKSGQEAWDTLQNIA 60

Query: 249 AEAEAEGKSVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDH 308
            +A  EGK+V DK+A+VLTDLEMPEMDGFTLTRKIKS   ++ +PVVIHSSL+G+ANEDH
Sbjct: 61  RDAAREGKTVRDKIALVLTDLEMPEMDGFTLTRKIKSEPAFQSIPVVIHSSLSGSANEDH 120

Query: 309 VRSVGADGYVAKFAPSDLAAMLAKVL 334
           VR VGA+GYVAKF  ++LA  +   L
Sbjct: 121 VRRVGANGYVAKFEANELAQAIVSAL 146


>STM2314_2 [T] COG0784 FOG Sty Salmonella typhimurium LT2
          Length = 144

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 104/127 (81%)

Query: 208 LAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGKSVMDKVAMVLT 267
           + A+DS+VARA++E+ L  + +P  M   G  AW ++QQL+ EAEAEGK + +K+A+VLT
Sbjct: 1   IVAEDSKVARAMLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKIALVLT 60

Query: 268 DLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADGYVAKFAPSDLA 327
           DLEMPEMDGFTLTRKIK+ ++ K++PVVIHSSL+G+ANEDH+R V ADGYVAKF  ++L+
Sbjct: 61  DLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVKADGYVAKFEINELS 120

Query: 328 AMLAKVL 334
           +++ +VL
Sbjct: 121 SVIQEVL 127


>PA3349_2 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 138

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 85/130 (65%), Gaps = 4/130 (3%)

Query: 207 VLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGKSVMDKVAMVL 266
           VL  DDS VAR  + +CL+ + +      DG QA   LQ + +E    G+   D++ M++
Sbjct: 9   VLVVDDSSVARKQVIRCLEAVGVEMTALNDGRQALEYLQNMLSE----GRRPEDELLMLI 64

Query: 267 TDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADGYVAKFAPSDL 326
           +D+EMPEMDG+TLT +I+S  + ++L +++H+SL+G  N+  V+ VGAD ++AKF P DL
Sbjct: 65  SDIEMPEMDGYTLTAEIRSDPRLQKLHILLHTSLSGVFNQAMVKKVGADDFLAKFRPDDL 124

Query: 327 AAMLAKVLPA 336
           AA + + + A
Sbjct: 125 AARVVERIKA 134