BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0016.p (444 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3430_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C... 261 2e-69 AGpT246_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C... 261 2e-69 CC3349_1 [T] COG2202 FOG Ccr Caulobacter vibrioides 252 1e-66 SMc03087_1 [T] COG2202 FOG Sme Sinorhizobium meliloti 250 4e-66 AGl2920_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C... 250 6e-66 >AGl3430_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 257 Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 174/237 (73%), Gaps = 1/237 (0%) Query: 28 NKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERNAPAYAQFWQKLG 87 +K+ A+IEF L GKI+ AN++F +GY L EI G+HH +FV ++P Y FW KL Sbjct: 18 SKSQAIIEFDLSGKILTANESFCRAIGYELAEIVGRHHSLFVEPSVVSSPDYKAFWSKLA 77 Query: 88 RGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQQLQAADFSGQIT 147 G++DQR Y+RI K G EVWI+A+YNP+ GRP K+VK A D+T+++L+AA+ +G+I Sbjct: 78 SGQFDQRQYKRIGKGGREVWIEASYNPVFRR-GRPVKVVKIATDITERKLRAAEDAGKID 136 Query: 148 AINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAERASAQYQEFWKR 207 A+++ +A+IEF G +L AN+NFL A+GYSLSE+ G+HH++F +PA S++Y++FW+R Sbjct: 137 ALSRAQAIIEFSPEGEVLTANDNFLAALGYSLSEVQGRHHSMFCDPAYTQSSEYKQFWQR 196 Query: 208 LAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVSIQTHATQTL 264 LA G A + R+ K G +++QA+YNPIFDM+G+VFKVVK+ATDV+ + +TL Sbjct: 197 LAGGDLVADEFMRLGKGGRKVFIQASYNPIFDMNGKVFKVVKFATDVTGRVENVETL 253 >AGpT246_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 262 Score = 261 bits (667), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 123/253 (48%), Positives = 173/253 (68%), Gaps = 1/253 (0%) Query: 16 RKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERN 75 R A+ LAA++K+ A+IEF L G+I+ AN NF +GY L EI G+HH +FV Sbjct: 11 RGANACAVLAALSKSQAMIEFDLSGRILTANDNFCRALGYELSEIIGKHHSMFVEPAFVK 70 Query: 76 APAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQ 135 + Y FW KL G +DQ+ Y+RI K G EVWI+A+YNP++ G+P K+VK A D+T Q Sbjct: 71 SADYKAFWAKLAAGNFDQQQYKRIGKGGKEVWIEASYNPVMRR-GKPVKVVKIATDITAQ 129 Query: 136 QLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAE 195 +L+ A+ +G+I A+++ +A+IEF G++L AN NFL A+GYSLSEI GKHH++F EP+ Sbjct: 130 KLKVAEDAGKIEALSRAQAIIEFTPTGDVLTANENFLSALGYSLSEIQGKHHSMFCEPSY 189 Query: 196 RASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVS 255 AS Y+ FWK LA G A + R+ K G +++QA+YNPIFDM+GRVFKVVK+ATDV+ Sbjct: 190 TASPDYRNFWKMLAGGDLMADEFMRLGKGGRKVFIQASYNPIFDMNGRVFKVVKFATDVT 249 Query: 256 IQTHATQTLQAAV 268 + + L + Sbjct: 250 TRVENVEQLAGCL 262 >CC3349_1 [T] COG2202 FOG Ccr Caulobacter vibrioides Length = 291 Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 171/250 (68%) Query: 19 DMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERNAPA 78 D ++ A++K+LA+IEF + G I+ AN NF MGY EI G+HH +FV E + A Sbjct: 40 DASQKIDALDKSLAMIEFDVKGTILAANANFCKAMGYEAREIIGKHHSLFVDPEYAASQA 99 Query: 79 YAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQQLQ 138 Y FW +LG+G++D R Y R+ K G EVWIQA+YNP+ ++ G+ +I+K A D+T Q+ Sbjct: 100 YRDFWMQLGQGQFDAREYLRLGKGGREVWIQASYNPVKNSAGKVTRILKVATDITAQKEV 159 Query: 139 AADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAERAS 198 A+ + ++ A+ +V+A IEF V+G IL+AN NFL VGY+LSEI GKHH++FV+PAE S Sbjct: 160 EAERTAKLDAVERVQATIEFTVDGVILNANENFLATVGYALSEIQGKHHSMFVDPAEARS 219 Query: 199 AQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVSIQT 258 Y FW+RL G++ A +RR+ K G +W+QA+YNP+FD GRV KVVK+ATDV+ + Sbjct: 220 EAYAAFWRRLNTGEFVAAEFRRIGKGGKEVWIQASYNPVFDAKGRVVKVVKFATDVTGRV 279 Query: 259 HATQTLQAAV 268 A + A+ Sbjct: 280 DAVNQIAQAL 289 Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 89/136 (65%), Gaps = 10/136 (7%) Query: 17 KADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERNA 76 +A+ +L A+ + A IEFT+DG I+ AN+NFL +GY L EI+G+HH +FV E + Sbjct: 160 EAERTAKLDAVERVQATIEFTVDGVILNANENFLATVGYALSEIQGKHHSMFVDPAEARS 219 Query: 77 PAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQQ 136 AYA FW++L GE+ +RRI K G EVWIQA+YNP+ DA GR K+VK+A DVT Sbjct: 220 EAYAAFWRRLNTGEFVAAEFRRIGKGGKEVWIQASYNPVFDAKGRVVKVVKFATDVT--- 276 Query: 137 LQAADFSGQITAINKV 152 G++ A+N++ Sbjct: 277 -------GRVDAVNQI 285 Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 58/119 (48%), Positives = 84/119 (70%) Query: 139 AADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAERAS 198 A D S +I A++K A+IEFDV G IL AN NF +A+GY EI+GKHH++FV+P AS Sbjct: 38 AGDASQKIDALDKSLAMIEFDVKGTILAANANFCKAMGYEAREIIGKHHSLFVDPEYAAS 97 Query: 199 AQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVSIQ 257 Y++FW +L GQ+DA Y R+ K G +W+QA+YNP+ + G+V +++K ATD++ Q Sbjct: 98 QAYRDFWMQLGQGQFDAREYLRLGKGGREVWIQASYNPVKNSAGKVTRILKVATDITAQ 156 >SMc03087_1 [T] COG2202 FOG Sme Sinorhizobium meliloti Length = 244 Score = 250 bits (639), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 165/240 (68%), Gaps = 1/240 (0%) Query: 16 RKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFVAEEERN 75 R D + A++K+ A+I+F L G ++ AN+NF +GY+L+EI GQHHRIF A E Sbjct: 6 RSRDARQIIDALSKSQAIIQFDLAGNVLDANENFCKALGYSLQEIVGQHHRIFCAPEFVA 65 Query: 76 APAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYARDVTQQ 135 Y +FW +LGRGE D YRR+ K G E+WIQA+YNP+ G+P K+VK+A D+T Sbjct: 66 TEEYREFWARLGRGELDSNSYRRLAKGGREIWIQASYNPVFRN-GKPCKVVKFATDITAA 124 Query: 136 QLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAE 195 +++A + +G++ AI++ +A+IEF G ++ AN NF +GY LSEI G+HH++F EP Sbjct: 125 KMKATEDAGKLDAISRSQAMIEFSPAGEVMTANENFCNTLGYQLSEIQGRHHSMFCEPGY 184 Query: 196 RASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVS 255 +A+Y +FW+RLA G++ A + R K G +W+QA YNPI D +GRV+KVVK+ATDV+ Sbjct: 185 TGTAEYADFWRRLAQGEFIANEFVRYGKGGKEVWIQAAYNPIRDPNGRVYKVVKFATDVT 244 >AGl2920_1 [T] COG2202 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 250 Score = 250 bits (638), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 169/251 (67%), Gaps = 1/251 (0%) Query: 10 LSRFSKRKADMLGQLAAINKALAVIEFTLDGKIIKANKNFLDLMGYTLEEIKGQHHRIFV 69 +S FSK D L A++++ A+IEF L GKI+KAN NF +GY EI G+ H IF+ Sbjct: 1 MSHFSKFGLDASAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFL 60 Query: 70 AEEERNAPAYAQFWQKLGRGEYDQRLYRRITKSGHEVWIQATYNPIIDALGRPFKIVKYA 129 + E+ +P Y FW KL RGEYDQ YRR K+G E+WI+A+YNP+ G+P+K+VK A Sbjct: 61 SSEDAASPEYKAFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPVF-RFGKPYKVVKIA 119 Query: 130 RDVTQQQLQAADFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAI 189 D+T + ++A+ G++ A+++ +A+IEF +G IL AN NFL + Y+ EI+GKHH+I Sbjct: 120 TDITVIKRKSAEDDGKLAALSRAQAMIEFTPDGKILGANENFLTTLDYTAEEIIGKHHSI 179 Query: 190 FVEPAERASAQYQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVK 249 F EPA S Y++FWK L G + G + R+ K+ +++QA+YNPI D GRVFKVVK Sbjct: 180 FCEPAYAQSQDYRDFWKELGRGHFSTGQFMRLGKDNKRVFIQASYNPIIDDRGRVFKVVK 239 Query: 250 YATDVSIQTHA 260 +A DV+ + HA Sbjct: 240 FAFDVTDRVHA 250 Score = 134 bits (336), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 61/134 (45%), Positives = 92/134 (68%), Gaps = 1/134 (0%) Query: 141 DFSGQITAINKVRAVIEFDVNGNILHANNNFLRAVGYSLSEIVGKHHAIFVEPAERASAQ 200 D S + A+++ +A+IEFD+ G IL AN+NF +AVGY SEIVG+ H+IF+ + AS + Sbjct: 10 DASAVLDALSRSQAIIEFDLTGKILKANDNFCKAVGYQPSEIVGRTHSIFLSSEDAASPE 69 Query: 201 YQEFWKRLAAGQYDAGLYRRVKKNGDALWLQANYNPIFDMDGRVFKVVKYATDVSIQTHA 260 Y+ FW +L+ G+YD G YRR KNGD +W++A+YNP+F G+ +KVVK ATD+++ Sbjct: 70 YKAFWAKLSRGEYDQGQYRRQAKNGDEIWIEASYNPVFRF-GKPYKVVKIATDITVIKRK 128 Query: 261 TQTLQAAVGGLSQA 274 + + LS+A Sbjct: 129 SAEDDGKLAALSRA 142