BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0012.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                      74   8e-14
CC3075_2 [T] COG0784 FOG Ccr Caulobacter vibrioides                    71   6e-13
CC0723_2 [T] COG0784 FOG Ccr Caulobacter vibrioides                    70   1e-12
all5309_3 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                      68   5e-12
PA5360 [TK] COG0745 Response regulators consisting of a CheY-lik...    67   1e-11

>all1068_2 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 167

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 7   ARTLLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVM 66
           ++ +L+V+D   +R   +   Q  GY VI+A NG EAL  +   HP + +V++DL MP M
Sbjct: 35  SKVILVVDDAISLRQTLSLTLQKSGYQVIQAQNGAEALEQL-QRHPEIQLVVSDLEMPRM 93

Query: 67  DGLELATRIKGDERFSAIPVVLLSATPMSNSWQALEVF--SALLTKPCSFEHLLSTIESV 124
           +G E  + I+ + +++ IPV++L++       Q  +     A L+KP     L++ IES+
Sbjct: 94  NGFEFLSHIQHNPQYTKIPVIILTSRSAEKHRQLAKELGAKAYLSKPYLEHELINHIESL 153


>CC3075_2 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 131

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 10/118 (8%)

Query: 10  LLIVED---NKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVM 66
           +L+V+D   N+ V  +F E F+     ++EA NG  AL ++ HE  AV +VL D+ MPVM
Sbjct: 1   VLVVDDHPVNRRVIRLFLEPFE---CELVEAENGRHALDVLQHE--AVDLVLMDVNMPVM 55

Query: 67  DGLELATRIKGDERFSAIPVVLLSATPMSNSWQ-ALEV-FSALLTKPCSFEHLLSTIE 122
           DGLE   R++ D RF+ +PVV L+A  MS   +  L+    A + KP    +LLS ++
Sbjct: 56  DGLEATRRLRQDPRFARLPVVALTADVMSAQIKTCLDAGCDAHVAKPIDLRNLLSVMD 113


>CC0723_2 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 118

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 10  LLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVMDGL 69
           LL+V+D    R + A +   +G  ++EA NG+ AL L+A     V  VL D  MPVM GL
Sbjct: 1   LLVVDDYAVNRKVIAMMLAPLGCEIVEADNGQRALDLLAERE--VDAVLLDFNMPVMGGL 58

Query: 70  ELATRIKGDERFSAIPVVLLSATPMSNSWQALEV--FSALLTKPCSFEHLLSTIESV 124
           E   R++ D R+  +P+V L+A  M +   A         + KP     L+ST+  V
Sbjct: 59  ETTRRLRADPRWRKLPIVCLTAGVMDDERAAAATAGMDGFIEKPIEMSTLVSTLARV 115


>all5309_3 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 214

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 4/117 (3%)

Query: 10  LLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVMDGL 69
           +LIV+D+ + R++   + Q +G   +EA +G++ L ++   HP   ++L DL MP MDG 
Sbjct: 3   ILIVDDDDNHRSMLNSLLQEIGCQTLEASDGKQGLQMVNEHHP--DLILLDLAMPNMDGF 60

Query: 70  ELATRIKGDERFSAIPVVLLSATPM-SNSWQALEV-FSALLTKPCSFEHLLSTIESV 124
           EL  +++ + + S+IP+++ SA+    N  ++L+   +A L KP   + L + + S+
Sbjct: 61  ELMVQLQENPQTSSIPIIVSSASVFEENRQRSLQAGATAFLPKPLQIDELFNALRSL 117


>PA5360 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 229

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 7   ARTLLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVM 66
            +T+LIV+D   +R + A   +  GY  +EA N ++A A++    P   ++L D  +P  
Sbjct: 3   GKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKP--DLILLDWMLPGT 60

Query: 67  DGLELATRIKGDERFSAIPVVLLSAT-PMSNSWQALEVFS-ALLTKPCSFEHLLSTIESV 124
            G+ELA R+K DE    IP+++L+A     N  Q LEV +   +TKP S   L++ +++V
Sbjct: 61  SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120