BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0030.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li...   260   9e-70
PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik...   148   5e-36
AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li...   146   2e-35
RSc1736 [TK] COG0745 Response regulators consisting of a CheY-li...   139   3e-33
SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l...   137   1e-32

>RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 232

 Score =  260 bits (664), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 125/147 (85%), Positives = 139/147 (94%)

Query: 1   VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60
           VLILTAADSV++RV+GLDLGADDYMAKPFALSELEARVRAL RRG GGG T+++HGPL+F
Sbjct: 78  VLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGGGATLVRHGPLAF 137

Query: 61  DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120
           DQVGRIAYI +QM++LSARELGLLE+LL R GRLVSKEQLVDHLC WGEEVSNNAIEVYV
Sbjct: 138 DQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDHLCGWGEEVSNNAIEVYV 197

Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEKL 147
           HRLRKKIEV G+RIATVRGLGYCLE++
Sbjct: 198 HRLRKKIEVDGIRIATVRGLGYCLERV 224


>PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 223

 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 101/145 (69%)

Query: 1   VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60
           VL+LTA   V+ RV GL+LGADDY+AKPF LSELEARV+AL RR   GG  + + G L +
Sbjct: 75  VLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGALVY 134

Query: 61  DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120
           D   R   + EQ L L++RE  +LE ++ R GR++SKEQL   +    EE S +AIE+YV
Sbjct: 135 DLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGLDEEASADAIEIYV 194

Query: 121 HRLRKKIEVGGVRIATVRGLGYCLE 145
           HRLRKK+E G VRI T RGLGY LE
Sbjct: 195 HRLRKKLEGGAVRIVTFRGLGYLLE 219


>AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 245

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 101/149 (67%)

Query: 1   VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60
           VLILTA  + E++V+GLDLGADDYM KPF ++E EARVR L RR AG   + +  G + F
Sbjct: 94  VLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNAGLRSSALSFGKVLF 153

Query: 61  DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120
           D   R      + L++ ARE+ LLEVL  R G++V+KE +V  L  + +++S NAIE YV
Sbjct: 154 DLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTGFDDDISANAIEQYV 213

Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEKLPE 149
            RLRK++   G+ + T RG+GY LEKLPE
Sbjct: 214 SRLRKRLAPHGLTVKTARGIGYYLEKLPE 242


>RSc1736 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 230

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 103/153 (67%)

Query: 1   VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60
           V+ILTA  +VE+RV+GL+LGADDY+ KPF L+E+EAR RAL RR  G   T ++ GPL +
Sbjct: 75  VMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPLHY 134

Query: 61  DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120
           D       +  + L L+ RE  +LEVL+ R GR V+K  + + +    E V+ +AIE+YV
Sbjct: 135 DGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFGINESVNADAIEIYV 194

Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEKLPENGAA 153
           HRLRKK++  GV I  +RGLGY LE +P+  AA
Sbjct: 195 HRLRKKLDGSGVAIVMLRGLGYLLEAVPQAPAA 227


>SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sme
           Sinorhizobium meliloti
          Length = 225

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 98/146 (67%)

Query: 1   VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60
           VLILTA  + E+RV+GLDLGADDY+ KPF + E EARVR L RR AG   +V+ +G +S 
Sbjct: 75  VLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQAGLRASVVSYGNVSL 134

Query: 61  DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120
           D   R        +E+ ARELGLLE+L  R G++V+K+ +V  L    +++S NAIE YV
Sbjct: 135 DLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTGLDDDLSPNAIEQYV 194

Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEK 146
            RLRK++   G+ + T RG+GY L+K
Sbjct: 195 SRLRKRLAPFGLTVRTARGIGYYLDK 220