BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0003.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype ...    98   1e-20
STM1920 [NT] COG0835 Chemotaxis signal transduction protein Sty ...    96   6e-20
cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Esc...    96   7e-20
ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs ...    96   7e-20
RSp1407 [NT] COG0835 Chemotaxis signal transduction protein Rso ...    95   8e-20

>YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype Yersinia
           pestis
          Length = 165

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 90/145 (62%), Gaps = 4/145 (2%)

Query: 23  RQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVRFG 82
           ++FL F +G E + + I  ++EI  +  +T +   P F++GV NLRG +VP+IDL V+F 
Sbjct: 17  QEFLIFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIIDLRVKFA 76

Query: 83  RAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADFIE 142
           +      + T +I++   Q     ++G++VD VS VLS+  + I P P F   +  +++ 
Sbjct: 77  QQGVTYNENTVVIVLNFGQR----VVGIVVDGVSDVLSLTNEQIRPAPEFAVTLATEYLT 132

Query: 143 GMINVNERFIVVLDVQRVLSVDELA 167
           G+ ++ ER ++++D++++LS +E++
Sbjct: 133 GLGSLGERMLILVDIEKLLSSEEMS 157


>STM1920 [NT] COG0835 Chemotaxis signal transduction protein Sty Salmonella
           typhimurium LT2
          Length = 167

 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 23  RQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVRFG 82
           ++FL F +G E + + I  ++EI  +  +T +   P F++GV NLRG +VP++DL V+F 
Sbjct: 17  QEFLVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFC 76

Query: 83  RAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADFIE 142
                    T +I++ L Q     ++G++VD VS VLS+  + I P P F   +  +++ 
Sbjct: 77  EGDVEYDDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132

Query: 143 GMINVNERFIVVLDVQRVLSVDELASL 169
           G+  + ER +++++++++L+ +E+A L
Sbjct: 133 GLGALGERMLILVNIEKLLNSEEMALL 159


>cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Escherichia
           coli K12
          Length = 167

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 94/155 (60%), Gaps = 4/155 (2%)

Query: 23  RQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVRFG 82
           ++FL F +G E + + I  ++EI  +  +T +   P F++GV NLRG +VP++DL ++F 
Sbjct: 17  QEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFS 76

Query: 83  RAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADFIE 142
           +        T +I++ L Q     ++G++VD VS VLS+  + I P P F   +  +++ 
Sbjct: 77  QVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132

Query: 143 GMINVNERFIVVLDVQRVLSVDELASLLGMSAEDA 177
           G+  + +R +++++++++L+ +E+A L   ++E A
Sbjct: 133 GLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA 167


>ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs Escherichia
           coli O157:H7
          Length = 167

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 94/155 (60%), Gaps = 4/155 (2%)

Query: 23  RQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGSVVPVIDLSVRFG 82
           ++FL F +G E + + I  ++EI  +  +T +   P F++GV NLRG +VP++DL ++F 
Sbjct: 17  QEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFS 76

Query: 83  RAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRPSFGAGIRADFIE 142
           +        T +I++ L Q     ++G++VD VS VLS+  + I P P F   +  +++ 
Sbjct: 77  QVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132

Query: 143 GMINVNERFIVVLDVQRVLSVDELASLLGMSAEDA 177
           G+  + +R +++++++++L+ +E+A L   ++E A
Sbjct: 133 GLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA 167


>RSp1407 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 163

 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 93/157 (59%), Gaps = 4/157 (2%)

Query: 11  VRKRQQEEVIESRQFLTFLVGAESFAMPIASIREIIEFGGLTEVPLMPDFLRGVINLRGS 70
           V+K    E     ++L F +G E + + I  ++EI  +  +T +   P+F++GVINLRG 
Sbjct: 3   VKKHAIGEETGGEEYLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFIKGVINLRGI 62

Query: 71  VVPVIDLSVRFGRAPTMEAKRTCIIIMELVQDEQLLLLGVMVDAVSAVLSIGVDHIEPRP 130
           +VP++DL ++F        + T +II+ L       ++G++VD VS VL++    I+P P
Sbjct: 63  IVPIVDLRIKFELERVEYNQYTVVIILNLTDR----VVGIVVDGVSDVLTLQSQQIKPAP 118

Query: 131 SFGAGIRADFIEGMINVNERFIVVLDVQRVLSVDELA 167
            F   +  ++I G+ +++ER ++++D++++L   ++A
Sbjct: 119 EFSGALDTEYIRGLGSIDERMLILVDIEKLLMSADMA 155