BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0001.p (498 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value cheA [NT] COG0643 Chemotaxis protein histidine kinase and relate... 325 2e-88 ZcheA [NT] COG0643 Chemotaxis protein histidine kinase and relat... 325 2e-88 ECs2598 [NT] COG0643 Chemotaxis protein histidine kinase and rel... 325 2e-88 YPO1666 [NT] COG0643 Chemotaxis protein histidine kinase and rel... 316 8e-86 STM1921 [NT] COG0643 Chemotaxis protein histidine kinase and rel... 315 2e-85 >cheA [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Eco Escherichia coli K12 Length = 654 Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 253/384 (65%), Gaps = 15/384 (3%) Query: 116 IDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQIRDA------ALTLRMVQINE 169 I+LVGELVI + ++A+R + I S+ + R+A +++RM+ + Sbjct: 275 INLVGELVI---TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEY 331 Query: 170 VFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHGIEPAAE 229 VF R+PR+VRD+A L K ++LT+ GS TELDKS++ER+ DPL H+VRN++DHGIE + Sbjct: 332 VFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEK 391 Query: 230 RIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAELSDAEI 289 R+AAGK + +L L+A H+ G++ +EV DDG G++R RIL KA +QGLT E +SD E+ Sbjct: 392 RLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE-NMSDDEV 450 Query: 290 YRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIRLPLTLA 349 +F PGFSTAEQVT++SGRGVGMDVVKRNI + G V I ++ G GT +RI LPLTLA Sbjct: 451 AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTTIRILLPLTLA 510 Query: 350 IISGFQVVVGNAVFVIPLDMVVECI-----DMPPRQNGSHIVAVRGEPLPFVPLRELFDL 404 I+ G V V + VF++PL+ V+E + D+ P G ++ VRGE LP V L ++F++ Sbjct: 511 ILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNV 570 Query: 405 PAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 464 + + +VI+Q G R LLVD L+G+ Q V+K L + KV G+S +TILGDG Sbjct: 571 AGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGS 630 Query: 465 VALILDIPHLVQHTQQQEQGNTAA 488 VALI+D+ L ++Q NTAA Sbjct: 631 VALIVDVSALQAINREQRMANTAA 654 >ZcheA [NT] COG0643 Chemotaxis protein histidine kinase and related kinases EcZ Escherichia coli O157:H7 EDL933 Length = 654 Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 253/384 (65%), Gaps = 15/384 (3%) Query: 116 IDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQIRDA------ALTLRMVQINE 169 I+LVGELVI + ++A+R + I S+ + R+A +++RM+ + Sbjct: 275 INLVGELVI---TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEY 331 Query: 170 VFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHGIEPAAE 229 VF R+PR+VRD+A L K ++LT+ GS TELDKS++ER+ DPL H+VRN++DHGIE + Sbjct: 332 VFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEK 391 Query: 230 RIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAELSDAEI 289 R+AAGK + +L L+A H+ G++ +EV DDG G++R RIL KA +QGLT E +SD E+ Sbjct: 392 RLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE-NMSDDEV 450 Query: 290 YRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIRLPLTLA 349 +F PGFSTAEQVT++SGRGVGMDVVKRNI + G V I ++ G GT +RI LPLTLA Sbjct: 451 AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLTLA 510 Query: 350 IISGFQVVVGNAVFVIPLDMVVECI-----DMPPRQNGSHIVAVRGEPLPFVPLRELFDL 404 I+ G V V + VF++PL+ V+E + D+ P G ++ VRGE LP V L ++F++ Sbjct: 511 ILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNV 570 Query: 405 PAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 464 + + +VI+Q G R LLVD L+G+ Q V+K L + KV G+S +TILGDG Sbjct: 571 AGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGS 630 Query: 465 VALILDIPHLVQHTQQQEQGNTAA 488 VALI+D+ L ++Q NTAA Sbjct: 631 VALIVDVSALQAINREQRMANTAA 654 >ECs2598 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Ecs Escherichia coli O157:H7 Length = 654 Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 253/384 (65%), Gaps = 15/384 (3%) Query: 116 IDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQIRDA------ALTLRMVQINE 169 I+LVGELVI + ++A+R + I S+ + R+A +++RM+ + Sbjct: 275 INLVGELVI---TQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEY 331 Query: 170 VFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHGIEPAAE 229 VF R+PR+VRD+A L K ++LT+ GS TELDKS++ER+ DPL H+VRN++DHGIE + Sbjct: 332 VFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEK 391 Query: 230 RIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAELSDAEI 289 R+AAGK + +L L+A H+ G++ +EV DDG G++R RIL KA +QGLT E +SD E+ Sbjct: 392 RLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSE-NMSDDEV 450 Query: 290 YRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIRLPLTLA 349 +F PGFSTAEQVT++SGRGVGMDVVKRNI + G V I ++ G GT +RI LPLTLA Sbjct: 451 AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLTLA 510 Query: 350 IISGFQVVVGNAVFVIPLDMVVECI-----DMPPRQNGSHIVAVRGEPLPFVPLRELFDL 404 I+ G V V + VF++PL+ V+E + D+ P G ++ VRGE LP V L ++F++ Sbjct: 511 ILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWKVFNV 570 Query: 405 PAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 464 + + +VI+Q G R LLVD L+G+ Q V+K L + KV G+S +TILGDG Sbjct: 571 AGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGS 630 Query: 465 VALILDIPHLVQHTQQQEQGNTAA 488 VALI+D+ L ++Q NTAA Sbjct: 631 VALIVDVSALQAINREQRMANTAA 654 >YPO1666 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Ype Yersinia pestis Length = 723 Score = 316 bits (809), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 169/370 (45%), Positives = 242/370 (65%), Gaps = 15/370 (4%) Query: 116 IDLVGELVIAGASARLIARRRK------DSQFEEATQAIDSLMEQIRDAALTLRMVQINE 169 I+LVGELVI + ++A+R + + ++ ++++ +++RM+ + Sbjct: 341 INLVGELVI---TQSMLAQRSSSLDPVINGDLLNSMGQLERNARDLQESVMSIRMMPMEY 397 Query: 170 VFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHGIEPAAE 229 VF RFPR+VRD+A L+K ++LT+ GS TELDKS++ER+ DPL H+VRN++DHGIE A Sbjct: 398 VFSRFPRLVRDLASKLNKQVELTLLGSSTELDKSLIERIIDPLTHLVRNSLDHGIEEPAT 457 Query: 230 RIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAELSDAEI 289 RIAAGK +L L+A H+ G++ +EV+DDG G++R RIL KA +QGL E +SD ++ Sbjct: 458 RIAAGKSPVGNLTLSAEHQGGNICIEVIDDGAGLNRQRILAKAQSQGLAVNE-NMSDEDV 516 Query: 290 YRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIRLPLTLA 349 +F GFSTAEQVT++SGRGVGMDVVKRNI + G V + + G GT +RI LPLTLA Sbjct: 517 GMLIFAQGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVQVSFQAGLGTSIRILLPLTLA 576 Query: 350 IISGFQVVVGNAVFVIPLDMVVECI-----DMPPRQNGSHIVAVRGEPLPFVPLRELFDL 404 I+ G V V N VF++PL+ V+E + D+ P G ++ VRGE LP V L +FD+ Sbjct: 577 ILDGMSVKVSNEVFILPLNAVMESLQPLAEDLHPLAGGERVLQVRGEFLPLVELYRVFDV 636 Query: 405 PAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 464 + + +VI+Q R LLVD L+G+ Q V+K L + KV G+S +TILGDG Sbjct: 637 KNAKTEATQGIVVILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGS 696 Query: 465 VALILDIPHL 474 VALI+D+ L Sbjct: 697 VALIVDVSAL 706 >STM1921 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Sty Salmonella typhimurium LT2 Length = 671 Score = 315 bits (806), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 174/384 (45%), Positives = 248/384 (64%), Gaps = 15/384 (3%) Query: 116 IDLVGELVIAGASARLIARRRKDSQFEEATQAIDSLMEQIRDA------ALTLRMVQINE 169 I+LVGELVI + ++A+R + I S+ + R+A +++RM+ + Sbjct: 292 INLVGELVI---TQSMLAQRSNELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEY 348 Query: 170 VFQRFPRIVRDIARDLDKDIDLTMTGSETELDKSMVERLADPLMHIVRNAIDHGIEPAAE 229 VF RFPR+VRD+A L K ++LT+ GS TELDKS++ER+ DPL H+VRN++DHGIE + Sbjct: 349 VFSRFPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIEMPEK 408 Query: 230 RIAAGKPAKASLRLNAMHESGSVLVEVMDDGRGMDRTRILEKAIAQGLTTPEAELSDAEI 289 R+ AGK +L L+A H+ G++ +EV DDG G++R RIL KA++QG+ E ++D E+ Sbjct: 409 RLEAGKNVVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAMSQGMAVNE-NMTDDEV 467 Query: 290 YRFVFEPGFSTAEQVTELSGRGVGMDVVKRNIDALQGEVAIDTEPGRGTVVRIRLPLTLA 349 +F PGFSTAEQVT++SGRGVGMDVVKRNI + G V I ++ G GT +RI LPLTLA Sbjct: 468 GMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGSGTTIRILLPLTLA 527 Query: 350 IISGFQVVVGNAVFVIPLDMVVECI-----DMPPRQNGSHIVAVRGEPLPFVPLRELFDL 404 I+ G V V VF++PL+ V+E + D+ P G ++ VRGE LP V L ++FD+ Sbjct: 528 ILDGMSVRVAGEVFILPLNAVMESLQPREEDLHPLAGGERVLEVRGEYLPLVELWKVFDV 587 Query: 405 PAREQARARKSLVIVQYGQLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGR 464 + + +VI+Q R LLVD L+G+ Q V+K L + KV G+S +TILGDG Sbjct: 588 DGAKTEATQGIVVILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGS 647 Query: 465 VALILDIPHLVQHTQQQEQGNTAA 488 VALI+D+ L ++Q TAA Sbjct: 648 VALIVDVSALQGLNREQRMAITAA 671