BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0023.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    78   4e-15

>PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 298

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 49/61 (80%)

Query: 1   MCRMIETNVGIGIVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLV 60
           +CRMIE  VGIG++P+SAA+RH +TM+LA +EL +PW++RERS++ ++++ L    R L+
Sbjct: 229 ICRMIEGGVGIGVIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCLRALI 288

Query: 61  D 61
           +
Sbjct: 289 E 289