BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0022.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 265 5e-71 STM0859 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 205 7e-53 RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 204 1e-52 BMEII1077 [K] COG0583 Transcriptional regulator Bme Brucella mel... 198 9e-51 RSc1196 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 155 7e-38 >PA0877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 298 Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 133/221 (60%), Positives = 167/221 (75%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R LS AA S R+K LE + G+RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARVKALEGQLGSRLLYRDSRGVELT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL HA+L M+QVE+LKS+ +Y + G+IRIFANTTAVTEF+PEIL FLA P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 121 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 180 V V L+ERL+ DI+RG+ +G+ D+GI+AGPV GLQVL+FSTDRLV+A HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 181 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 V +DTL+++HIGL EG+TLH FL + V + G++L LRI Sbjct: 181 ARVRLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRI 221 >STM0859 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 296 Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 145/221 (65%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 60 M FD+ DL+LF+ I+E S+TR AE+ +S A+ S RI+ LE RLLYR SKG+ L+ Sbjct: 1 MHFDIKDLKLFLAISEEGSITRGAEKTYMSAASGSVRIRNLEQSINLRLLYRSSKGITLS 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 AG T HHA L + Q+E L+SDMQ++ GIKG++RIF++ TA+ E++P +L FL + Sbjct: 61 SAGETFKHHASLIVNQMEMLRSDMQEHVKGIKGHVRIFSSITAIAEYLPPLLSHFLTLYN 120 Query: 121 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 180 VN+ L E + +I+R + EG D+GIVAG + D L++L F TDRLVL TA +HP A Sbjct: 121 DVNIDLREYPSPEIVRSVIEGKTDLGIVAGNITTDNLEILPFRTDRLVLITATDHPFADR 180 Query: 181 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 SV F + ++YE I L EG+ + F+ K +LK+RI Sbjct: 181 KSVTFHELIQYEQISLPEGTGMFEFIRKKAELVPSKLKIRI 221 >RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 294 Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/221 (45%), Positives = 146/221 (66%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 60 M FDLTDLRLF+ AE S+T AER +L+LA+ S RI+ +E G LL R +GV+ T Sbjct: 1 MRFDLTDLRLFLHTAESGSITAGAERAHLTLASASARIRGMEAALGVPLLTRNRRGVETT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 AG TL+HHA++ +QQ+E ++ ++ +Y G+KG++R+ +NT A+TEF+PE L FLA+HP Sbjct: 61 AAGRTLVHHARVVLQQMERMRGELGEYARGLKGHVRLLSNTAAMTEFLPETLSAFLAQHP 120 Query: 121 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 180 +V++ LEE ++H+I+ + +G ADIGIV V GL+ F DRLVL TA +HPLA Sbjct: 121 EVDIDLEELVSHEIVEAVAQGRADIGIVNDAVDLSGLETFPFRHDRLVLVTARDHPLAAR 180 Query: 181 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 + F D L+ + +GL + L +L + G RLK R+ Sbjct: 181 REIAFVDALQEDFVGLTGDNALQAYLAGHAARAGHRLKYRV 221 >BMEII1077 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 294 Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 143/221 (64%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 60 M FD+TDLRLF+ IAE S+T A +N++L A S R++ +E G LL RE GV +T Sbjct: 1 MRFDVTDLRLFVSIAETGSITHGAAMVNMALGAASARVRGMEELAGVALLNRERLGVSIT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAG LL H ++ +QQ+ + S++ ++ +G+KG++R+F+NT A+ EF+P L FL +P Sbjct: 61 PAGRALLQHGRIVLQQLGRMHSELDEFAHGLKGHVRLFSNTNALAEFLPVALSSFLMDNP 120 Query: 121 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 180 VN+ L+E L+ +I+R + EG ADIGIVAG V L+ F D LV+ HP A Sbjct: 121 GVNIDLQEHLSDEIVRSVVEGIADIGIVAGTVDVASLETFPFREDYLVVVVPQGHPFARR 180 Query: 181 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 + F+DTL+Y+ IGL +G+ L +FL+ GQRL+LR+ Sbjct: 181 RRIAFKDTLDYDFIGLSQGAALQNFLSAHAMRMGQRLRLRV 221 >RSc1196 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 127/219 (57%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLTPA 62 FDL L LF+ +A L S++ A + +L++AA S RI +LE G LLYR + GV+LT A Sbjct: 6 FDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGVELTEA 65 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 G HA +Q VE + + + G +G +R++ANT+++T+F+ + L F+ +P + Sbjct: 66 GQACFRHAVGILQDVERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFMLANPAI 125 Query: 123 NVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGAGS 182 ++LEE+ + DI+ ++E AD+GI A +GLQ ++ D L L T HPLAG Sbjct: 126 RIALEEQDSGDIVAALRENRADLGIFAAGTPCEGLQSFDYREDDLALVTPRGHPLAGRKQ 185 Query: 183 VPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 F + +++ + L G++L L + G+ L+LRI Sbjct: 186 ARFAEAADFDFVSLPPGTSLAAQLLEESQRLGRPLRLRI 224