BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0008.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2735 [K] COG4977 Transcriptional regulator containing an amid...    64   7e-11
SMb20055 [K] COG4977 Transcriptional regulator containing an ami...    62   3e-10
PA3571 [K] COG2207 AraC-type DNA-binding domain-containing prote...    60   2e-09
PA0564 [K] COG2207 AraC-type DNA-binding domain-containing prote...    60   2e-09
PA2332 [K] COG2207 AraC-type DNA-binding domain-containing prote...    58   6e-09

>AGl2735 [K] COG4977 Transcriptional regulator containing an amidase domain
           and an AraC-type DNA-binding HTH domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 327

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query: 1   LVRRFQEVGGTTPGELLQQLRMARAAQLLSYSKMGTAQIGEAVGYQSEAAFNRVFKKFSG 60
            +RRF+   G  P E +Q LR+ +A +LL +++    QI  +VGY+  AAF RVF +  G
Sbjct: 249 FLRRFKAATGMKPIEYVQHLRVGKARELLEFTRRSVDQIAWSVGYEDAAAFRRVFHRILG 308

Query: 61  MGPGAYRRK 69
           + PG YR +
Sbjct: 309 LSPGEYRSR 317


>SMb20055 [K] COG4977 Transcriptional regulator containing an amidase domain
           and an AraC-type DNA-binding HTH domain Sme
           Sinorhizobium meliloti
          Length = 329

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query: 1   LVRRFQEVGGTTPGELLQQLRMARAAQLLSYSKMGTAQIGEAVGYQSEAAFNRVFKKFSG 60
            +RRF+   G  P E  Q LR+ +A +LL ++K    QI  +VGY+  AAF ++F +  G
Sbjct: 254 FLRRFKAATGMKPIEYAQHLRVGKARELLEFTKRSVEQIAWSVGYEDAAAFRKLFHRIVG 313

Query: 61  MGPGAYRRK 69
           + PG YR +
Sbjct: 314 LSPGDYRHR 322


>PA3571 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 307

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 44/77 (57%)

Query: 1   LVRRFQEVGGTTPGELLQQLRMARAAQLLSYSKMGTAQIGEAVGYQSEAAFNRVFKKFSG 60
            V R++ + G TP +    L++  A QLL  S    A++G+AVGY     F+R+F K  G
Sbjct: 231 FVSRYKAITGRTPIQHFLHLKIEYACQLLDSSDQSVARVGQAVGYDDSYYFSRLFSKVMG 290

Query: 61  MGPGAYRRKGRLEQGQA 77
           + P AYR++ R  +G A
Sbjct: 291 LSPSAYRQRVRQGEGGA 307


>PA0564 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 303

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 1   LVRRFQEVGGTTPGELLQQLRMARAAQLLSYSKMGTAQIGEAVGYQSEAAFNRVFKKFSG 60
            VR F  +GGT+P  LL ++RM +A  LL  ++     I    GYQSEAAF+R F++  G
Sbjct: 230 FVRAFSALGGTSPWNLLTRIRMEKARGLLRQTQKSLLDIAAETGYQSEAAFSRNFRQAFG 289

Query: 61  MGPGAYRRKG 70
             PG +RR+ 
Sbjct: 290 ESPGRFRRQA 299


>PA2332 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 301

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 3   RRFQEVGGTTPGELLQQLRMARAAQLLSYSKMGTAQIGEAVGYQSEAAFNRVFKKFSGMG 62
           +RF E+ G +PG++L  LRM RA  LL  +    A++  AVGYQS AAF R F K +G  
Sbjct: 234 KRFNELSGQSPGQVLLALRMHRACALLR-ADASVAEVAAAVGYQSTAAFTRAFHKATGQQ 292

Query: 63  PGAYRRKGR 71
           PGAYR+  R
Sbjct: 293 PGAYRKASR 301