BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0176.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH234 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    83   2e-16
SMa0316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...    74   6e-14
L35675 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon...    64   6e-11
SMa0559 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...    64   9e-11
Cgl2344 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...    62   3e-10

>MTH234 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Mth Methanothermobacter
           thermautotrophicus
          Length = 125

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 11  EKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAII 70
           E+++ G  +   +  +S  A     +DVAP   R++ E+ +GD+YSR  LDL+ RE+  +
Sbjct: 2   ERYRRGMEILNRMNRKSYTAIRDELEDVAPDLARFVAEFAYGDVYSRGVLDLKTRELLTL 61

Query: 71  ASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFSE 130
           A+   L       LK H+  AL AG +K+EI E+++Q+A  AG P AI A+  A+E F+E
Sbjct: 62  AALTVLRADDQ--LKSHVRGALNAGCSKDEIIEVMIQMAVYAGFPAAINAVLAAKEVFTE 119


>SMa0316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Sme Sinorhizobium meliloti
          Length = 420

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 6   TPYADEK-FKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRY 64
           T   DEK F  G A     +G S    V +F DVAPG GR I+   +GD++ RP LD + 
Sbjct: 273 TTKDDEKRFMRGVATLAETSGGSGADVVDSFKDVAPGLGRLIVAHCYGDIFCRPALDPKV 332

Query: 65  REVAIIASCATLGVI-GHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGV 123
           RE+  I++ A  G +     L +HI  AL  G T  EI E L  +   AG P    A+ +
Sbjct: 333 RELGAISALAAQGTVAAEKPLGVHIDAALNLGATPEEIVETLFNIIPYAGYPLIEKALLI 392

Query: 124 AREAFSEFS 132
           A +  S F 
Sbjct: 393 AHDRISLFD 401



 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 6   TPYADEKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYR 65
           +P   +K   G AV + + G++    V+     +    R+ I++ +GD+ SR GLDLR R
Sbjct: 15  SPGDRQKHLRGLAVLKQIGGENFGGPVSQLASFSEDLARFTIQYPYGDVLSRDGLDLRTR 74

Query: 66  EVAIIASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAR 125
           ++   A+    G    + L  H+   L AG T+ ++ ++L   A   G PTAI A+ + R
Sbjct: 75  QILTAATLLAHGS-AQSQLSFHLYGLLNAGGTRADVVDLLFISAGLLGFPTAINAVPIVR 133

Query: 126 EAFSE 130
           +  ++
Sbjct: 134 DILAD 138


>L35675 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Lla Lactococcus lactis
          Length = 122

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 11  EKFKTGSAVFEGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAII 70
            K + G      + G +A+    +  D+AP     ++++ FG +Y R  L+ + RE+  I
Sbjct: 2   NKKEIGLKNLAKIDGAAAEVVFDSLKDLAPDLNNLMLKFAFGTIYERGVLNFKDRELITI 61

Query: 71  ASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFSE 130
            S  T G   +  L++HI  +L  GLT+ EI E  +  A   G P  + AI VA+E F++
Sbjct: 62  TSLLTQGGCENQ-LRVHIQASLNVGLTQEEIIETFIHYAPYVGFPRVLNAIFVAKEIFTD 120


>SMa0559 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Sme Sinorhizobium meliloti
          Length = 259

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 21  EGVTGQSAQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAIIASCATLGVIG 80
           E    Q A      F  VAPG  +Y  ++ F DL+ RP L  R R +  IA+  ++G + 
Sbjct: 149 EEAEAQRATTVGNQFGSVAPGLVQYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVE 208

Query: 81  HAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFSE 130
              +  H+  AL  GL++ +  E++  +AF AG P A+ A+ VA+  F +
Sbjct: 209 Q--ITFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAMSALPVAKAVFEK 256


>Cgl2344 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit Cgl Corynebacterium glutamicum
          Length = 122

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 11  EKFKTGSAVFEGVTGQS-AQAFVTAFDDVAPGFGRYIIEWEFGDLYSRPGLDLRYREVAI 69
           ++++TG      V G +     V    +V   F  +I    +GD++ RPGLD   R +  
Sbjct: 2   DRYETGMKNRREVLGDAHVDRAVANTTEVTEKFQDFITRTAWGDIWERPGLDHTQRRLLT 61

Query: 70  IASCATLGVIGHAALKMHILVALRAGLTKNEIGEILMQVAFAAGLPTAIGAIGVAREAFS 129
           IA    +G  G   L MHI  ALRAG+ +  IGE+++  A  AG+P +     +   A S
Sbjct: 62  IAILTAVGNDG--ELDMHIRAALRAGVDQETIGEVILHTAVYAGVPNSNHGFKLLNNAVS 119

Query: 130 EFS 132
           +  
Sbjct: 120 DLQ 122